View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_5 (Length: 391)
Name: NF9412_low_5
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 3731267 - 3731621
Alignment:
| Q |
17 |
cagaaccagcattaataataaagagtttatttagagtctgcnnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaa |
116 |
Q |
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| T |
3731267 |
cagaaccagcattaataataaagagtttatttagagtctgcaaaaaaaaaaa--tagatgaactttaatcaacttcaatagggaaactactacaataaaa |
3731364 |
T |
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| Q |
117 |
atttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731365 |
atttaagaattcgtctttaactttttatgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacac |
3731464 |
T |
|
| Q |
217 |
attaaaatagcagtcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaa |
316 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731465 |
att--aatagcattcatgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaa |
3731562 |
T |
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| Q |
317 |
tttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataat |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731563 |
tttccatgaagatgtaccttgcaggctttgagaaattagacattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 240 - 375
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
240 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
339 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
340 |
ggctttgagaaattagacattccctagaagaataat |
375 |
Q |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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