View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9412_low_6 (Length: 361)
Name: NF9412_low_6
Description: NF9412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9412_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 170278 - 170604
Alignment:
| Q |
18 |
atttacagattcacttggtataaaactattagaaacgtaaatcatcattgcatatctattatgttagttttgtaaccacttaaattatctgcaaccatgt |
117 |
Q |
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| T |
170278 |
atttacagattcacttggtataaaactattagaaacgtaaatcatcattgcatatctattatgttagttttgtaaccacttaaattatctgcaaccatgt |
170377 |
T |
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| Q |
118 |
tgccgatgagaaaaaggagcttacaagtaaagaagggtcttatacgaaagagagaagctagtatgctttatagtcatctttgtaatacttaattttttca |
217 |
Q |
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| T |
170378 |
tgccgatgagaaaaaggagcttacaagcaaagaagggtcttatacgaaagagagaagctagtatgctttatagtcatctttgtaatacttaattttttca |
170477 |
T |
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| Q |
218 |
atatttactttcattcaattatcttgttggcatatatatatttctctgttttaagtgggcggtgggcactaagatctggtgatctaccattataggtgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
170478 |
atatttactttcattcaattatcttgttggcatagatatatt--tctgttttaagtgggcggtgggcactaagatctggtgatctaccattatagttgga |
170575 |
T |
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| Q |
318 |
gcaactgcataaaatcttcaagctctgtg |
346 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
170576 |
gcaactgcataaaatcttcaagctctgtg |
170604 |
T |
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