View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9413_high_5 (Length: 241)
Name: NF9413_high_5
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9413_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 38975999 - 38976213
Alignment:
| Q |
13 |
ataagcgcttgattaagttatttatccaaacaaggtcattgtcaacttgcatagatgctttattagtttatcagtcttacaatctttcttctgctggacc |
112 |
Q |
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| T |
38975999 |
ataagcgcttgattaagttatttatccaaacaaggtcattgtcaacttgcatagatgctttattagtttatcagtctgacaatctttcttctgctggacc |
38976098 |
T |
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| Q |
113 |
tacttgatttgcaggaacagaaagtcagagtcgtgtcctttttgtcgcggtagcttaaggagggttaattcggaggatctatgggtattaacttgtgatg |
212 |
Q |
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| T |
38976099 |
tatttgatttgcaggaacagaaagtcagagtcgtgtcctttttgtcgcggtagcttaaggagggttaattcggaggatctatgggtattaacttgtgatg |
38976198 |
T |
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| Q |
213 |
aagatgttgttgatg |
227 |
Q |
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| T |
38976199 |
aagatgttgttgatg |
38976213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 227
Target Start/End: Complemental strand, 34296980 - 34296874
Alignment:
| Q |
121 |
ttgcaggaacagaaagtcagagtcgtgtcctttttgtcgcggtagcttaaggagggttaattcggaggatctatgggtattaacttgtgatgaagatgtt |
220 |
Q |
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| T |
34296980 |
ttgcaggaacacaaagtcagagtcttgtccattttgccgcgggagcataagaagagttaattctgaggatctatgggtactcacttgtgatgacgatgta |
34296881 |
T |
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| Q |
221 |
gttgatg |
227 |
Q |
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||||||| |
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| T |
34296880 |
gttgatg |
34296874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 9380046 - 9380012
Alignment:
| Q |
12 |
tataagcgcttgattaagttatttatccaaacaag |
46 |
Q |
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| T |
9380046 |
tataagcgcttaattaagttatttatccaaacaag |
9380012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 7008551 - 7008507
Alignment:
| Q |
3 |
cgcttatggtataagcgcttgattaagttatttatccaaacaagg |
47 |
Q |
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| T |
7008551 |
cgcttatgctataagcgcttaattaagttgtttatccaaaaaagg |
7008507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31341118 - 31341075
Alignment:
| Q |
1 |
agcgcttatggtataagcgcttgattaagttatttatccaaaca |
44 |
Q |
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| T |
31341118 |
agcgcttatgcaataagcgcttgattaagttgtttatccaaaca |
31341075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39823268 - 39823311
Alignment:
| Q |
1 |
agcgcttatggtataagcgcttgattaagttatttatccaaaca |
44 |
Q |
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|||||||||| | |||||||||||||||||| |||||||||||| |
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| T |
39823268 |
agcgcttatgctgtaagcgcttgattaagttgtttatccaaaca |
39823311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26516222 - 26516180
Alignment:
| Q |
1 |
agcgcttatggtataagcgcttgattaagttatttatccaaac |
43 |
Q |
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|||||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
26516222 |
agcgcttatgctataagcgcttaattaagttgtttatccaaac |
26516180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 39257537 - 39257578
Alignment:
| Q |
6 |
ttatggtataagcgcttgattaagttatttatccaaacaagg |
47 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||| |
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| T |
39257537 |
ttatgctataagcgcttaattaagttgtttatccaaacaagg |
39257578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 4768974 - 4769008
Alignment:
| Q |
12 |
tataagcgcttgattaagttatttatccaaacaag |
46 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
4768974 |
tataagcgcttaattaagttatttatccaaacaag |
4769008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 15514970 - 15514933
Alignment:
| Q |
5 |
cttatggtataagcgcttgattaagttatttatccaaa |
42 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |
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| T |
15514970 |
cttatggtataagcgcttaattaagttgtttatccaaa |
15514933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 3204699 - 3204731
Alignment:
| Q |
12 |
tataagcgcttgattaagttatttatccaaaca |
44 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
3204699 |
tataagcgcttgattaagttgtttatccaaaca |
3204731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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