View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9413_low_1 (Length: 473)

Name: NF9413_low_1
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9413_low_1
NF9413_low_1
[»] chr4 (6 HSPs)
chr4 (46-369)||(27598145-27598467)
chr4 (159-319)||(24355750-24355909)
chr4 (156-283)||(34360838-34360964)
chr4 (186-282)||(34650836-34650932)
chr4 (159-283)||(55291241-55291364)
chr4 (159-283)||(46405495-46405621)
[»] chr2 (5 HSPs)
chr2 (157-326)||(34353231-34353399)
chr2 (161-259)||(37357238-37357336)
chr2 (183-326)||(15507004-15507146)
chr2 (159-257)||(15354411-15354509)
chr2 (293-326)||(12695357-12695390)
[»] chr1 (2 HSPs)
chr1 (147-326)||(3430523-3430700)
chr1 (219-276)||(4655712-4655768)
[»] chr3 (6 HSPs)
chr3 (162-319)||(26141666-26141822)
chr3 (201-283)||(22938500-22938581)
chr3 (160-283)||(3383532-3383657)
chr3 (233-283)||(22938376-22938425)
chr3 (190-283)||(26519955-26520047)
chr3 (182-283)||(49366253-49366353)
[»] chr7 (6 HSPs)
chr7 (182-325)||(46777270-46777412)
chr7 (161-259)||(36016414-36016512)
chr7 (159-283)||(41467536-41467659)
chr7 (202-283)||(41742383-41742463)
chr7 (233-283)||(2397867-2397916)
chr7 (202-278)||(2497701-2497776)
[»] chr5 (4 HSPs)
chr5 (196-326)||(38353601-38353730)
chr5 (210-282)||(9992553-9992624)
chr5 (185-282)||(15311594-15311686)
chr5 (200-281)||(5709252-5709333)
[»] chr8 (6 HSPs)
chr8 (159-283)||(45197148-45197271)
chr8 (197-335)||(32286042-32286179)
chr8 (201-259)||(34935140-34935198)
chr8 (158-256)||(7643739-7643832)
chr8 (293-326)||(40737228-40737261)
chr8 (235-283)||(32404622-32404669)
[»] chr6 (3 HSPs)
chr6 (186-326)||(8484641-8484780)
chr6 (233-325)||(8030784-8030875)
chr6 (200-321)||(10324442-10324564)
[»] scaffold0236 (1 HSPs)
scaffold0236 (223-282)||(17825-17884)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 46 - 369
Target Start/End: Complemental strand, 27598467 - 27598145
Alignment:
Q  46 ggtaattcaatgcaaaaatatttgtgagacaaatcaaaatttctttatcttaagtaattggggtgagagtacgtcagatcgccttgtaaggaattagatt 145  Q
    ||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| ||||||    
T  27598467 ggtaattaaatgcaaaaatatctgtgtgacaaatcaaa-tttctttatcttaagtaattagggtgagaatacgtcagatcgtcttttaaggaactagatt 27598369  T
Q  146 gtattttaagaatgggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctca 245  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  27598368 gtattttaaaaatgggaaatgctaatcagtgcccttagggcaatggttagagaagcaaatatagtaatcttgcattggaacttgtgcattcaacttctca 27598269  T
Q  246 aaagtttaaaaagttggtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcaccggttagtctaacccattaagaatta 345  Q
    ||||| |||||||||||||||||||| |||||||||||       ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  27598268 aaagtctaaaaagttggtattttcaagttaaaactttctttttttgatttccttaaccattatcctaaaggcaccggttagcctaacccattaagaatta 27598169  T
Q  346 aggtgataattagggtgaataata 369  Q
    |||||| |||||||||||||||||    
T  27598168 aggtgagaattagggtgaataata 27598145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 24355909 - 24355750
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaag 258  Q
    |||||||||||| ||||||||| | | |||||||||  |||||||||||| |||| | ||||||||| ||||| |||||||| ||||||||| ||||||     
T  24355909 gggaaatgctaaccagtgtcctcaagacaatggttaaggaagcaaatatagtaatatcgcattggaacttgtgcattcaactcctcaaaagtctaaaaaa 24355810  T
Q  259 ttggtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcac 319  Q
    || ||||||||||||||||||||||       | ||||||||||||||||||||| |||||    
T  24355809 tt-gtattttcaacttaaaactttctctttttggtttccttaaccattgccctaagggcac 24355750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 283
Target Start/End: Original strand, 34360838 - 34360964
Alignment:
Q  156 aatgggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaa 255  Q
    ||||||||||| ||||||||| ||| |||||||||||||  |||||||||||| |||||| | |||| || ||||| |||||||| ||||||||| ||||    
T  34360838 aatgggaaatgttaatcagtgccctcagggcaatggttaaggaagcaaatatagtaatctcgtattgaaacttgtgcattcaactcctcaaaagtctaaa 34360937  T
Q  256 aagttggtattttcaacttaaaactttc 283  Q
    ||| ||||||||||||||||||||||||    
T  34360938 aag-tggtattttcaacttaaaactttc 34360964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 34650932 - 34650836
Alignment:
Q  186 caatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaacttt 282  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||| |  |||||||||||||||||||||    
T  34650932 caatggttaaagaagcaaatatagtaattttgcattggaatttgtgcattcaactcctcaaaagtttaaaaaatgagtattttcaacttaaaacttt 34650836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 55291241 - 55291364
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaag 258  Q
    |||||||| ||| ||||| ||| ||||||||| |||  |||||||||||| |||| |||||||| || ||||| ||| |||||||||||| | ||||||     
T  55291241 gggaaatgttaaccagtgccctcagggcaatgattaaggaagcaaatatagtaattttgcattgaaacttgtgcattaaacttctcaaaaatataaaaa- 55291339  T
Q  259 ttggtattttcaacttaaaactttc 283  Q
     || |||||||||| ||||||||||    
T  55291340 atgatattttcaacctaaaactttc 55291364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 46405621 - 46405495
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatat---attaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaa 255  Q
    |||||||||||| ||||| ||| |||||||||||||  |||||||||||   | |||||||||||   || ||||| ||||| ||| |||||||| ||||    
T  46405621 gggaaatgctaaccagtgccctcagggcaatggttaaggaagcaaatatagcagtaatcttgcatcaaaacttgtgcattcagcttttcaaaagtataaa 46405522  T
Q  256 aagttggtattttcaacttaaaactttc 283  Q
    ||| || |||||||||| ||||| ||||    
T  46405521 aag-tgatattttcaacctaaaattttc 46405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 34353231 - 34353399
Alignment:
Q  157 atgggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaa 256  Q
    |||| |||||||||  |||| ||| |||| ||||||||  ||| |||||||| |||| |||||||| || ||||| |||||||| |||||||||||||||    
T  34353231 atggaaaatgctaacaagtgccctcagggaaatggttaaggaaccaaatatagtaattttgcattgaaacttgtgcattcaactcctcaaaagtttaaaa 34353330  T
Q  257 agttggtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcaccggttag 326  Q
    || ||||||||||||||||||| ||||       | ||||||||||||||||||||||||||||||||||    
T  34353331 ag-tggtattttcaacttaaaattttctttttttggtttccttaaccattgccctaaaggcaccggttag 34353399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 37357238 - 37357336
Alignment:
Q  161 gaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagt 259  Q
    |||||||||| |||||  || |||||||| ||||  |||||||||||| ||||||||||||| || ||||| |||||||||||||||||| ||||||||    
T  37357238 gaaatgctaaccagtgctctcagggcaatagttaaggaagcaaatatagtaatcttgcattgaaacttgtgcattcaacttctcaaaagtataaaaagt 37357336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 326
Target Start/End: Complemental strand, 15507146 - 15507004
Alignment:
Q  183 gggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaacttt 282  Q
    |||||||| ||| ||||||||||||| |||| ||||||| ||| ||||| ||| |||| || |||| | ||||||| ||||||||| |||||||||||||    
T  15507146 gggcaatgattaaagaagcaaatataataattttgcattagaacttgtgcatttaactccttaaaaatctaaaaag-tggtattttaaacttaaaacttt 15507048  T
Q  283 cnnnnnnngatttccttaaccattgccctaaaggcaccggttag 326  Q
    |         ||| |||||||||||||||||| ||| |||||||    
T  15507047 ctttttttagttttcttaaccattgccctaaaagcatcggttag 15507004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 15354509 - 15354411
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaa 257  Q
    ||||||||||||  ||||  || || |||||| |||  |||| ||||||| |||| || |||||||| ||||| |||||||||||||||||| ||||||    
T  15354509 gggaaatgctaactagtgctctcagagcaatgattaatgaagtaaatatagtaattttacattggaacttgtgcattcaacttctcaaaagtataaaaa 15354411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 12695357 - 12695390
Alignment:
Q  293 tttccttaaccattgccctaaaggcaccggttag 326  Q
    ||||||||||||||||||||| ||||||||||||    
T  12695357 tttccttaaccattgccctaagggcaccggttag 12695390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 326
Target Start/End: Original strand, 3430523 - 3430700
Alignment:
Q  147 tattttaagaatgggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaa 246  Q
    |||||||| || |||||||||||| ||||| ||| || ||||||||||  |||| |||||||  ||||||||||||||| ||||| ||||||||||||||    
T  3430523 tattttaaaaaagggaaatgctaaccagtgccctcagagcaatggttaaggaag-aaatatagcaatcttgcattggaacttgtgcattcaacttctcaa 3430621  T
Q  247 aagtttaaaaagttggtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcaccggttag 326  Q
    |||| ||||||| || |||||| ||| ||||||||||       ||||||||||||||||| |||||  |||||||||||    
T  3430622 aagtataaaaag-tgatatttttaacctaaaactttctttttttgatttccttaaccattgtcctaagagcaccggttag 3430700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 4655712 - 4655768
Alignment:
Q  219 attggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaa 276  Q
    |||| |||||||| |||||||| || |||||||||||||| || ||||||||||||||    
T  4655712 attgaaatttgtgcattcaactccttaaaagtttaaaaag-tgatattttcaacttaa 4655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 319
Target Start/End: Complemental strand, 26141822 - 26141666
Alignment:
Q  162 aaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttg 261  Q
    |||||||||||||| || | | |||||||||||  |||||||||||| |||||||||||||||| ||||| |||||||| ||||||| | ||||||  ||    
T  26141822 aaatgctaatcagtatcttcaaggcaatggttaaggaagcaaatatagtaatcttgcattggaacttgtgcattcaactcctcaaaaatctaaaaa-atg 26141724  T
Q  262 gtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcac 319  Q
    ||||||||||||| ||||||||       |||||||||||||||||| |||| |||||    
T  26141723 gtattttcaactttaaactttctttttttgatttccttaaccattgctctaagggcac 26141666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 22938581 - 22938500
Alignment:
Q  201 caaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    |||||||| |||||| |||| |||| ||||  |||||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  22938581 caaatatagtaatctcgcatgggaacttgtacattcaacttctcaaaagtct-aaaaggtggtattttcaacttaaaactttc 22938500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 3383532 - 3383657
Alignment:
Q  160 ggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagt 259  Q
    ||||||| ||||||||||||||  | ||| |||||   || |||||||| |||||| | ||||||| ||||| |||||||| ||||||||| ||||| ||    
T  3383532 ggaaatgttaatcagtgtcctttagacaacggttaagaaaacaaatataataatctcgtattggaacttgtgcattcaactcctcaaaagtctaaaatgt 3383631  T
Q  260 --tggtattttcaacttaaaactttc 283  Q
      | |||||||||||| ||| |||||    
T  3383632 aattgtattttcaactaaaagctttc 3383657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 22938425 - 22938376
Alignment:
Q  233 attcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    |||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  22938425 attcaacttctcaaaagtctaaaaggt-ggtattttcaacttaaaactttc 22938376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 26520047 - 26519955
Alignment:
Q  190 ggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    ||||| ||||| ||||||| |||| |  ||||| ||||| |||| ||||||  |||||||||||||||||| ||||||| || |||||| ||||    
T  26520047 ggttaaagaagtaaatataataatatgacattgaaatttatgtagtcaactcttcaaaagtttaaaaagtt-gtatttttaaattaaaattttc 26519955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 49366253 - 49366353
Alignment:
Q  182 agggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactt 281  Q
    ||||||||| |||  | |||||||||| |||||  |||||| |||||||| ||||||||  | |||| | |||||| | ||||||||||| |||||||||    
T  49366253 agggcaatgattaaggtagcaaatatagtaatcccgcattgaaatttgtgcattcaactctttaaaaatctaaaaaat-ggtattttcaatttaaaactt 49366351  T
Q  282 tc 283  Q
    ||    
T  49366352 tc 49366353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 182 - 325
Target Start/End: Original strand, 46777270 - 46777412
Alignment:
Q  182 agggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactt 281  Q
    |||||||||||||   || |||||| | |||||||||||||||| ||||| |||||||||||||||||  ||||||| || |||||||||| ||||||||    
T  46777270 agggcaatggttaagaaaacaaatacagtaatcttgcattggaacttgtgcattcaacttctcaaaagcataaaaag-tgatattttcaacataaaactt 46777368  T
Q  282 tcnnnnnnngatttccttaaccattgccctaaaggcaccggtta 325  Q
    ||       | ||||||||||||||||||||| |||||||||||    
T  46777369 tctctttttggtttccttaaccattgccctaagggcaccggtta 46777412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 36016414 - 36016512
Alignment:
Q  161 gaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagt 259  Q
    |||||| ||| ||||| ||| ||| |||||||||  |||||||||||| |||| |||||| |||| ||||| |||||||||||||||||| ||||||||    
T  36016414 gaaatgttaaccagtgccctcaggacaatggttaaggaagcaaatatagtaatattgcatcggaacttgtgcattcaacttctcaaaagtataaaaagt 36016512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 41467659 - 41467536
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaag 258  Q
    |||||||||||||||||| ||| || ||||||||||   || |||||||| |||||  | |||  || ||||| |||||||||||||||||| ||||||     
T  41467659 gggaaatgctaatcagtgccctcagagcaatggttaagaaaacaaatatagtaatcccgtattaaaacttgtgcattcaacttctcaaaagtctaaaaa- 41467561  T
Q  259 ttggtattttcaacttaaaactttc 283  Q
     ||||||||||||||||||| ||||    
T  41467560 atggtattttcaacttaaaattttc 41467536  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 41742463 - 41742383
Alignment:
Q  202 aaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    ||||||| ||| |||||| ||||| ||||| |||||||||||||||| | ||||||| || ||||||||||| |||||||||    
T  41742463 aaatatagtaagcttgcagtggaacttgtgcattcaacttctcaaaaatctaaaaag-tgatattttcaactaaaaactttc 41742383  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 2397916 - 2397867
Alignment:
Q  233 attcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||    
T  2397916 attcaacttctcaaaagtctaaaaag-tggtattttgaacttaaaactttc 2397867  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 2497776 - 2497701
Alignment:
Q  202 aaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaa 278  Q
    ||||||| ||||||||||||| ||||| || ||||||||  |||||| ||||||||  | |||||||||| ||||||    
T  2497776 aaatataataatcttgcattgaaatttatgcattcaactcttcaaaaatttaaaaa-atagtattttcaatttaaaa 2497701  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 38353730 - 38353601
Alignment:
Q  196 agaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttcnnnnnnngattt 295  Q
    ||||||||||||| |||||| ||||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||        ||||    
T  38353730 agaagcaaatatagtaatctcgcattggaacttgtgcattcaactcctcaaaagtctaaaaag-tggtattttcaacttaaaactttctttttttaattt 38353632  T
Q  296 ccttaaccattgccctaaaggcaccggttag 326  Q
    |||||||||||||| ||| |  |||||||||    
T  38353631 ccttaaccattgccttaaggataccggttag 38353601  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 9992624 - 9992553
Alignment:
Q  210 taatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaacttt 282  Q
    |||||| | ||||||| ||||| || |||||  ||||||||||||||||| ||||||||||||||||||||||    
T  9992624 taatctcgtattggaacttgtgcatccaactcttcaaaagtttaaaaagt-ggtattttcaacttaaaacttt 9992553  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 15311686 - 15311594
Alignment:
Q  185 gcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaacttt 282  Q
    ||||||||||  ||| ||| |||| |||||| |||| |||| ||||| |||||||||   |||| ||||||||  |||||||||||||||||||||||    
T  15311686 gcaatggttaaggaatcaagtatagtaatctcgcataggaacttgtgcattcaactt---aaaaatttaaaaa--tggtattttcaacttaaaacttt 15311594  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 5709333 - 5709252
Alignment:
Q  200 gcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactt 281  Q
    ||||||||| || | |||||||| ||||| |||| |||| | ||||||||| ||||||  || ||||||| |||||||||||    
T  5709333 gcaaatatagtattattgcattgaaatttatgtaatcaattcctcaaaagtgtaaaaaagtgttattttctacttaaaactt 5709252  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 283
Target Start/End: Complemental strand, 45197271 - 45197148
Alignment:
Q  159 gggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaag 258  Q
    |||||||||||| ||||  |||||||||||| ||||  |||||| ||||| |||||| |||||| || ||||| ||||||||| |||||||||||||||     
T  45197271 gggaaatgctaaccagtacccttagggcaatagttaaggaagcagatataataatctcgcattgaaacttgtgcattcaacttttcaaaagtttaaaaa- 45197173  T
Q  259 ttggtattttcaacttaaaactttc 283  Q
    ||  |||||||||||||||||||||    
T  45197172 ttaatattttcaacttaaaactttc 45197148  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 335
Target Start/End: Original strand, 32286042 - 32286179
Alignment:
Q  197 gaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttcnnnnnnngatttc 296  Q
    |||||||||||| || | ||||||||||| ||||| |||||||||||||||||| ||||||| || |||||||||| ||||||||||       | ||||    
T  32286042 gaagcaaatataatatttttgcattggaacttgtgcattcaacttctcaaaagtataaaaag-tgatattttcaacctaaaactttctttttttggtttc 32286140  T
Q  297 cttaaccattgccctaaaggcaccggttagtctaaccca 335  Q
     |||||||||||||||| |||||| |||||  |||||||    
T  32286141 tttaaccattgccctaagggcaccagttagcataaccca 32286179  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 34935198 - 34935140
Alignment:
Q  201 caaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagt 259  Q
    |||||||| |||||||||||||||| ||||| ||||||||  |||||| ||||||||||    
T  34935198 caaatataataatcttgcattggaacttgtgcattcaactcttcaaaaatttaaaaagt 34935140  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 7643832 - 7643739
Alignment:
Q  158 tgggaaatgctaatcagtgtccttagggcaatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaa 256  Q
    ||||||||||||| ||||||     ||||||||||||   ||| ||||||| |||| ||| |||| || ||||| |||||||| |||||||||||||||    
T  7643832 tgggaaatgctaaccagtgt-----gggcaatggttaagaaagaaaatatagtaattttgtattgaaacttgtgcattcaactcctcaaaagtttaaaa 7643739  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 40737261 - 40737228
Alignment:
Q  293 tttccttaaccattgccctaaaggcaccggttag 326  Q
    ||||||||||||||||||||| ||||||||||||    
T  40737261 tttccttaaccattgccctaagggcaccggttag 40737228  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 32404669 - 32404622
Alignment:
Q  235 tcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttc 283  Q
    |||||| |||||||||||||||| | | |||||||||||||||||||||    
T  32404669 tcaactcctcaaaagtttaaaaaat-gttattttcaacttaaaactttc 32404622  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 8484780 - 8484641
Alignment:
Q  186 caatggttagagaagcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttcnn 285  Q
    |||||||||  |||||||||||| |||| ||  ||||||||||||| |||||||||||||||||| ||||||| || |||| ||||| ||||||||||      
T  8484780 caatggttaaggaagcaaatatagtaatttttaattggaatttgtgcattcaacttctcaaaagtataaaaag-tgatattctcaacctaaaactttctt 8484682  T
Q  286 nnnnngatttccttaaccattgccctaaaggcaccggttag 326  Q
         | |||||||||||||||||||||  |||||||||||    
T  8484681 tttttggtttccttaaccattgccctaagagcaccggttag 8484641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 8030875 - 8030784
Alignment:
Q  233 attcaacttctcaaaagtttaaaaagttggtattttcaacttaaaactttcnnnnnnngatttccttaaccattgccctaaaggcaccggtta 325  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||       | ||| |||||||||||||||| ||||||| ||||    
T  8030875 attcaacttctcaaaagtttaaaaag-tgctattttcaacttaaaactttctttttttggttttcttaaccattgccctataggcacctgtta 8030784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 321
Target Start/End: Original strand, 10324442 - 10324564
Alignment:
Q  200 gcaaatatattaatcttgcattggaatttgtgtattcaacttctcaaaagt-ttaaaaagttggtattttcaacttaaaactttcnnnnnnngatttcct 298  Q
    ||||||||| || | ||||||||||| ||||  |||||||| ||||||||| | |||||  | ||||||||||||||||||||||       | ||||||    
T  10324442 gcaaatatagtagtattgcattggaacttgtacattcaactcctcaaaagtctaaaaaaaatagtattttcaacttaaaactttctttttttggtttcct 10324541  T
Q  299 taaccattgccctaaaggcaccg 321  Q
    ||||||||||||||| |||||||    
T  10324542 taaccattgccctaagggcaccg 10324564  T

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Target: scaffold0236 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 17884 - 17825
Alignment:
Q  223 gaatttgtgtattcaacttctcaaaagtttaaaaagttggtattttcaacttaaaacttt 282  Q
    ||||||||||| |||||| ||||||||||||||||||||   |||| || ||||||||||    
T  17884 gaatttgtgtaatcaactcctcaaaagtttaaaaagttgtatttttaaaattaaaacttt 17825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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