View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9413_low_11 (Length: 246)

Name: NF9413_low_11
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9413_low_11
NF9413_low_11
[»] chr3 (6 HSPs)
chr3 (1-231)||(38975767-38975987)
chr3 (6-169)||(40880871-40881026)
chr3 (4-64)||(14548741-14548801)
chr3 (6-64)||(43115048-43115106)
chr3 (8-73)||(30322031-30322096)
chr3 (7-59)||(42733962-42734014)
[»] chr1 (11 HSPs)
chr1 (4-78)||(33976676-33976750)
chr1 (4-59)||(37241847-37241902)
chr1 (4-64)||(6659504-6659564)
chr1 (4-64)||(7218094-7218154)
chr1 (4-64)||(23902087-23902147)
chr1 (4-64)||(25479571-25479631)
chr1 (14-59)||(5924055-5924100)
chr1 (80-177)||(34536216-34536313)
chr1 (78-162)||(6279455-6279539)
chr1 (5-73)||(30257674-30257742)
chr1 (4-64)||(39347987-39348047)
[»] chr4 (12 HSPs)
chr4 (4-73)||(53315316-53315385)
chr4 (78-169)||(55870265-55870356)
chr4 (4-74)||(30207581-30207651)
chr4 (4-64)||(11264291-11264351)
chr4 (4-64)||(24929483-24929543)
chr4 (4-64)||(49219129-49219189)
chr4 (7-73)||(6466057-6466123)
chr4 (78-167)||(2996629-2996718)
chr4 (4-73)||(36048523-36048592)
chr4 (6-59)||(42866060-42866113)
chr4 (4-56)||(18630670-18630722)
chr4 (4-64)||(45128330-45128390)
[»] chr7 (7 HSPs)
chr7 (7-73)||(2825242-2825308)
chr7 (4-58)||(20553093-20553147)
chr7 (79-169)||(30751576-30751666)
chr7 (7-64)||(3610760-3610817)
chr7 (4-57)||(24895346-24895399)
chr7 (4-59)||(38010704-38010759)
chr7 (6-59)||(15075110-15075163)
[»] chr8 (5 HSPs)
chr8 (4-73)||(11183535-11183604)
chr8 (7-73)||(31862486-31862552)
chr8 (4-64)||(7645968-7646028)
chr8 (21-73)||(8535781-8535833)
chr8 (9-57)||(30627929-30627977)
[»] chr5 (5 HSPs)
chr5 (4-73)||(37588371-37588440)
chr5 (4-69)||(42181107-42181172)
chr5 (4-58)||(15003540-15003594)
chr5 (11-64)||(33533559-33533612)
chr5 (103-167)||(4855776-4855840)
[»] chr2 (7 HSPs)
chr2 (4-73)||(10285850-10285919)
chr2 (6-58)||(757447-757499)
chr2 (4-59)||(22681210-22681265)
chr2 (4-59)||(30552669-30552724)
chr2 (4-73)||(11513888-11513957)
chr2 (11-64)||(16867736-16867789)
chr2 (4-73)||(39983332-39983401)
[»] chr6 (10 HSPs)
chr6 (126-169)||(738464-738507)
chr6 (4-59)||(2117393-2117448)
chr6 (113-162)||(33738072-33738121)
chr6 (4-64)||(281868-281928)
chr6 (4-64)||(1275139-1275199)
chr6 (5-73)||(7148657-7148725)
chr6 (4-64)||(8035168-8035228)
chr6 (4-64)||(31671094-31671154)
chr6 (88-180)||(32171295-32171387)
chr6 (79-159)||(34939801-34939881)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 38975987 - 38975767
Alignment:
Q  1 ttatcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagcttacggtcttatggatatgtcataaactgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38975987 ttatcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagcttatggtcttatggatatgtcataaactgt 38975888  T
Q  101 tcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatccacacaagcctaatataagatagagacaaatgt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  38975887 tcctataagctctctcaaacagtcacacaaatgtttatttcaataaa----------taagttaatccacacaagcctaatataagatagagacaaatgt 38975798  T
Q  201 gattaattaccacttgcggtagcatttgatg 231  Q
    |||||||||||||||||||||||||||||||    
T  38975797 gattaattaccacttgcggtagcatttgatg 38975767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 40881026 - 40880871
Alignment:
Q  6 atataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagcttacggtcttatggatatgtcataaactgttccta 105  Q
    ||||||||||||| ||||||||| ||| || ||||||||  ||||  ||||||||| || | | |||||||||        |||||||||  ||||   |    
T  40881026 atataagctataaattgttttcataaactatcctagagaagttataaaaataagtttaaaacaacttacggtc--------atgtcataagttgttttca 40880935  T
Q  106 taagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatcca 169  Q
    |||||| |||||||||||| |||  ||||| ||||||||| ||||||| |||||||| ||||||    
T  40880934 taagctctctcaaacagtctcacgtatgttcatttcaatagataagcttaaataagtcaatcca 40880871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 14548801 - 14548741
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||||||||||||||||||| ||  ||  || ||||||||||||||||||| ||||    
T  14548801 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaa 14548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 43115048 - 43115106
Alignment:
Q  6 atataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||||||||||  || || | | ||||||||||||||||||| ||||    
T  43115048 atataagctataagttgttttcatgaactatcattgagagcttatggaaataagctgaa 43115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 30322096 - 30322031
Alignment:
Q  8 ataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||| ||||||||||||| ||  || |||| ||||||||||||||||| ||||| | ||||||    
T  30322096 ataagctgtaagttgttttcataagttatcctaaagagcttatggaaataaattgaacacagctta 30322031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 42734014 - 42733962
Alignment:
Q  7 tataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    ||||||||||||||||||||||| |  || | | |||||||||||||||||||    
T  42734014 tataagctataagttgttttcaccagctatcgtggagagcttatggaaataag 42733962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 33976676 - 33976750
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagcttacggtc 78  Q
    ||||||||| ||||||||||||||  ||  || |||||||||||||||||||||||||||| | |||||| ||||    
T  33976676 tcatataagttataagttgttttcttaacctatcctagagagcttatggaaataagttgaaaaaagcttaaggtc 33976750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 37241902 - 37241847
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    |||||||||||| |||||||||||| || ||| ||||||||||||||| |||||||    
T  37241902 tcatataagctagaagttgttttcataagatatcctagagagcttatgaaaataag 37241847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 6659504 - 6659564
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||| |||||||| ||  ||||| ||||||||||| |||||||| ||||    
T  6659504 tcatataagctataagatgttttcataagctaaccaagagagcttatcgaaataagctgaa 6659564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 7218154 - 7218094
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||||||||||||||||||| ||  || ||| |||| |||||| ||||||||||||    
T  7218154 tcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaa 7218094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 23902147 - 23902087
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||||||||||||||||||| ||  || | |||||||||||||||| |||| ||||    
T  23902147 tcatataagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaa 23902087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 25479571 - 25479631
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||| ||||||||||||||||| ||  || ||||||||||||||| ||||||| ||||    
T  25479571 tcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaa 25479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 5924055 - 5924100
Alignment:
Q  14 tataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||    
T  5924055 tataagttgttttcataagttatcctagagagcttatggaaataag 5924100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 34536216 - 34536313
Alignment:
Q  80 tatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatccacacaagcc 177  Q
    |||||| ||||||||| |||||   ||||||  |||||||||||| ||||| ||||||| |||||| ||| | | |||||||| | |||| |||||||    
T  34536216 tatggacatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtcaatagatacgttcaaataagtcattccaaacaagcc 34536313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 6279455 - 6279539
Alignment:
Q  78 cttatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagt 162  Q
    |||||||| ||||  | ||||||| | ||||||| |||||||||| ||||||| || |||| ||| ||  |||||||||||||||    
T  6279455 cttatggacatgtggttaactgtttccataagctctctcaaacagccacacaagtgcttatgtcagtagttaagctgaaataagt 6279539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 30257674 - 30257742
Alignment:
Q  5 catataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    |||||||||| ||||||||||||| ||| || ||| ||| |||||| |||||||| |||| | ||||||    
T  30257674 catataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagctta 30257742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 39348047 - 39347987
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||| ||||||||||||||||||| ||| || |||  | |||||||||||||||| ||||    
T  39348047 tcatacaagctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaa 39347987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 53315316 - 53315385
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    |||||||||||||||| |||| ||| |||  ||||||||||||||||| ||||||||| || ||||||||    
T  53315316 tcatataagctataagctgttctcaaaaacaaacctagagagcttatgaaaataagttaaaaatagctta 53315385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 55870356 - 55870265
Alignment:
Q  78 cttatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatcca 169  Q
    |||||||| | |||||||||| ||   ||||||| ||||||| |||| ||||||||||||| ||| || |||| || |||||||||||||||    
T  55870356 cttatggacaggtcataaacttttttcataagctatctcaaagagtctcacaaatgtttatgtcattagataaactcaaataagttaatcca 55870265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 30207651 - 30207581
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagcttac 74  Q
    ||||||||||||||||||||||||| ||  || | ||||||| ||||||||||||| |||| | |||||||    
T  30207651 tcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttac 30207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 11264291 - 11264351
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||| | ||||||||||||||| ||   | ||||||||||||||||||||||||||||    
T  11264291 tcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaa 11264351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 24929483 - 24929543
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||| ||||||||||||||||||| ||| |   |||||||||||||||||||||| ||||    
T  24929483 tcataaaagctataagttgttttcataaactctactagagagcttatggaaataagctgaa 24929543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 49219129 - 49219189
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||||||||||||||||||| ||| || | || |||| ||||||||||||| ||||    
T  49219129 tcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaa 49219189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 6466123 - 6466057
Alignment:
Q  7 tataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||| ||||||||||||| || ||  ||  |||||||| |||||||||||||||||| ||||||||    
T  6466123 tataatctataagttgtttccataagctattctagagagattatggaaataagttgaaaatagctta 6466057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 2996629 - 2996718
Alignment:
Q  78 cttatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatc 167  Q
    |||||||| |||||||||  ||||   ||||||| |||||||||||| || || || |||| |||||||||||| | ||||||| |||||    
T  2996629 cttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaataagctaatc 2996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 36048523 - 36048592
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    |||||||||||||||| | |||||| ||  || | ||||||||||||||||||||| |||  ||||||||    
T  36048523 tcatataagctataagctattttcaaaagctatcttagagagcttatggaaataagctgacaatagctta 36048592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 42866060 - 42866113
Alignment:
Q  6 atataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    ||||||||||||||||||||||| ||  || ||| |||||||||||||| ||||    
T  42866060 atataagctataagttgttttcataagctatccttgagagcttatggaagtaag 42866113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 18630670 - 18630722
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaat 56  Q
    ||||||||||||||||||||||||||||  || || | |||||||||| ||||    
T  18630670 tcatataagctataagttgttttcacaagctatccaacagagcttatgaaaat 18630722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 45128390 - 45128330
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||||||||| ||||||||| ||| |  |||| | |||||||||||||||| ||||    
T  45128390 tcatataagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaa 45128330  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2825308 - 2825242
Alignment:
Q  7 tataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||| |||||||||||||||||||  || |||||||| |||||||||||||| |||| ||| ||||    
T  2825308 tataaactataagttgttttcacaagctatcctagagaacttatggaaataagctgaaaataactta 2825242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 20553093 - 20553147
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataa 58  Q
    ||||| ||||||||||||||||||||||  || ||||| ||||||||||||||||    
T  20553093 tcatacaagctataagttgttttcacaagttatcctagtgagcttatggaaataa 20553147  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 30751576 - 30751666
Alignment:
Q  79 ttatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatcca 169  Q
    ||||||| |||  |||||||||| ||||||||| || ||||||||| ||||| || |||| ||| || ||||| | |||||||||||||||    
T  30751576 ttatggacatgctataaactgtttctataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataagttaatcca 30751666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 3610817 - 3610760
Alignment:
Q  7 tataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||||||||  ||| || |||||||||||||| |||||||| ||||    
T  3610817 tataagctataagttgttttcgtaaactatcctagagagcttatagaaataagctgaa 3610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 24895346 - 24895399
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaata 57  Q
    |||||||||||||||||||||||||||| |||   | |||||||||||||||||    
T  24895346 tcatataagctataagttgttttcacaagatattgtggagagcttatggaaata 24895399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38010704 - 38010759
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    |||||||||||||||| |||||||| ||  || |||||||| ||||||||||||||    
T  38010704 tcatataagctataagctgttttcataatctatcctagagaacttatggaaataag 38010759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 15075163 - 15075110
Alignment:
Q  6 atataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    ||||||| |||||||| |||||| ||| || | |||||||||||||||||||||    
T  15075163 atataagttataagttattttcataaactaccttagagagcttatggaaataag 15075110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 11183535 - 11183604
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    |||||| ||||||||| |||||||||||  || ||| ||||||||||||||||||| |||| | ||||||    
T  11183535 tcatattagctataagctgttttcacaagctaccctggagagcttatggaaataagctgaaaacagctta 11183604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 31862486 - 31862552
Alignment:
Q  7 tataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||| |||||||| ||  || ||||||||||||||| ||||||| |||| | ||||||    
T  31862486 tataagctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagctta 31862552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 7645968 - 7646028
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||| |||||||||||||||||||| ||  ||||||  | |||||||||||||||| ||||    
T  7645968 tcatgtaagctataagttgttttcataagctaacctgtaaagcttatggaaataagctgaa 7646028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8535833 - 8535781
Alignment:
Q  21 tgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    |||||||| ||| || ||||||||||||||||||||||| | || ||||||||    
T  8535833 tgttttcataaattatcctagagagcttatggaaataagcttaaaatagctta 8535781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 30627977 - 30627929
Alignment:
Q  9 taagctataagttgttttcacaaaataacctagagagcttatggaaata 57  Q
    |||||||||||||||||||| ||  || | |||||||||||||||||||    
T  30627977 taagctataagttgttttcataagttatcttagagagcttatggaaata 30627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 37588440 - 37588371
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||||||||||||||| ||  ||  || ||||||||||||||||||| |||| | ||||||    
T  37588440 tcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagctta 37588371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 42181172 - 42181107
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatag 69  Q
    |||||||||||||||||||||| |||||  || ||||||||||| | ||||||||| |||| ||||    
T  42181172 tcatataagctataagttgtttgcacaagttatcctagagagctcaaggaaataagctgaaaatag 42181107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 15003594 - 15003540
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataa 58  Q
    ||||||||||||||||| ||||||| ||  || || |||||||||||||||||||    
T  15003594 tcatataagctataagtggttttcataagctatccaagagagcttatggaaataa 15003540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 33533612 - 33533559
Alignment:
Q  11 agctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||| |||||||||||  || | | ||||||||||||||||||||||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaa 33533559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 4855776 - 4855840
Alignment:
Q  103 ctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatc 167  Q
    ||||||||| |||||||||||| ||||| ||||||  ||| || ||||||| |||||||| ||||    
T  4855776 ctataagctctctcaaacagtctcacaagtgtttaagtcattatataagctcaaataagtcaatc 4855840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 10285850 - 10285919
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||||||| |||| || ||  |||| |||||| ||||||||||||||||||| | ||||||    
T  10285850 tcatataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagctta 10285919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 757447 - 757499
Alignment:
Q  6 atataagctataagttgttttcacaaaataacctagagagcttatggaaataa 58  Q
    |||||||||||||| |||||||| ||| || ||| ||||||||||||||||||    
T  757447 atataagctataagatgttttcaaaaattatcctggagagcttatggaaataa 757499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 22681265 - 22681210
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    |||||||||||||||| |||||||| ||  || |||||||| ||||||||||||||    
T  22681265 tcatataagctataagctgttttcataatctatcctagagaacttatggaaataag 22681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 30552724 - 30552669
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    |||||| |||||||| || |||||| ||| || |||||||||||||||||||||||    
T  30552724 tcatatcagctataaattattttcataaactatcctagagagcttatggaaataag 30552669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 11513888 - 11513957
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||||||||||||||| ||  || | | |||| ||| |||||||||| |||| ||||||||    
T  11513888 tcatataagctataagttgttttcataagctatcatggagaacttttggaaataagctgaaaatagctta 11513957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 16867736 - 16867789
Alignment:
Q  11 agctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    ||||||||| |||||||||||  || | | ||||||||||||||||||||||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaa 16867789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 39983332 - 39983401
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||||||||||||||| ||  || ||| ||||||| ||| ||||||  |||| ||||||||    
T  39983332 tcatataagctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagctta 39983401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 738507 - 738464
Alignment:
Q  126 cacaaatgtttatttcaataaataagctgaaataagttaatcca 169  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||    
T  738507 cacaaatgtttatctcaatagataagctcaaataagttaatcca 738464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 2117393 - 2117448
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataag 59  Q
    |||||||| |||||||||||||||| ||  || |||||||||||||| ||||||||    
T  2117393 tcatataatctataagttgttttcataagttatcctagagagcttattgaaataag 2117448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 33738072 - 33738121
Alignment:
Q  113 tctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagt 162  Q
    |||||||||||| ||||||| ||||| |||||||| ||||| ||||||||    
T  33738072 tctcaaacagtctcacaaatatttatgtcaataaacaagctcaaataagt 33738121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 281928 - 281868
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||| ||| |||| ||  || ||||||||||| ||||||||||| ||||    
T  281928 tcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaa 281868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 1275139 - 1275199
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||| |||||||| |   || ||| ||||||||||||||||||| ||||    
T  1275139 tcatataagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaa 1275199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 7148657 - 7148725
Alignment:
Q  5 catataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaatatagctta 73  Q
    ||||||||||||||| | |||| | ||  || ||| ||||||||||| |||||||||||| ||||||||    
T  7148657 catataagctataaggtattttaataagctaccctggagagcttatgaaaataagttgaaaatagctta 7148725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 8035228 - 8035168
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||| |||||||||||| ||  || |||||| |||||| | ||||||||||||    
T  8035228 tcatataagctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaa 8035168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 31671154 - 31671094
Alignment:
Q  4 tcatataagctataagttgttttcacaaaataacctagagagcttatggaaataagttgaa 64  Q
    |||||||||||||||| |||||||  ||| || |||||| |||||||| ||||||| ||||    
T  31671154 tcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaa 31671094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 32171387 - 32171295
Alignment:
Q  88 tgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaataagttaatccacacaagcctaa 180  Q
    |||||||| |||||   ||||||| |||||||||||| | ||| || |||| ||||||  ||||||||||||||  |||||| ||| ||||||    
T  32171387 tgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaatacttaagctgaaataagacaatccaaacaggcctaa 32171295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 34939801 - 34939881
Alignment:
Q  79 ttatggatatgtcataaactgttcctataagctgtctcaaacagtcacacaaatgtttatttcaataaataagctgaaata 159  Q
    ||||||| ||||||||| ||||| |  |||||| ||  |||||||  ||||||||||||| ||| || |||||||||||||    
T  34939801 ttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataagctgaaata 34939881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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