View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9413_low_15 (Length: 228)

Name: NF9413_low_15
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9413_low_15
NF9413_low_15
[»] chr8 (4 HSPs)
chr8 (16-132)||(4141756-4141872)
chr8 (157-201)||(4141897-4141941)
chr8 (26-125)||(9779794-9779894)
chr8 (76-131)||(7503887-7503942)
[»] chr7 (2 HSPs)
chr7 (25-128)||(5031193-5031297)
chr7 (20-129)||(26554366-26554476)
[»] chr4 (3 HSPs)
chr4 (20-131)||(3516841-3516953)
chr4 (59-131)||(29236550-29236622)
chr4 (157-213)||(11167120-11167176)
[»] chr6 (5 HSPs)
chr6 (16-131)||(9860125-9860241)
chr6 (25-131)||(6120084-6120191)
chr6 (59-131)||(26304314-26304386)
chr6 (59-132)||(30351220-30351293)
chr6 (168-212)||(22607389-22607433)
[»] chr1 (3 HSPs)
chr1 (18-129)||(41151223-41151335)
chr1 (157-213)||(38703384-38703440)
chr1 (157-213)||(27232417-27232472)
[»] chr2 (7 HSPs)
chr2 (16-82)||(19546582-19546648)
chr2 (16-129)||(15954324-15954438)
chr2 (28-129)||(32188360-32188462)
chr2 (41-129)||(11112927-11113015)
chr2 (19-120)||(32973526-32973628)
chr2 (179-213)||(40453257-40453291)
chr2 (157-213)||(2461420-2461476)
[»] chr3 (2 HSPs)
chr3 (26-131)||(19116686-19116791)
chr3 (18-79)||(26618592-26618654)
[»] chr5 (2 HSPs)
chr5 (76-131)||(8760018-8760073)
chr5 (18-127)||(30860589-30860697)
[»] scaffold0426 (1 HSPs)
scaffold0426 (18-123)||(2579-2684)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 4141756 - 4141872
Alignment:
Q  16 agacaaattgacatttacctacggacaatgtatagttgaaattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggatttt 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4141756 agacaaattgacatttacctatggacaatgtatagttgaaattaaatagttgaattctgaacttttacttacagaaaaatgacattttatgacggatttt 4141855  T
Q  116 gtccgtaggtacaagtg 132  Q
    |||||||| ||||||||    
T  4141856 gtccgtagttacaagtg 4141872  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 4141897 - 4141941
Alignment:
Q  157 caaattttaaagcccctttaagtttgaggccctgtgccaaggacc 201  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  4141897 caaattttgaagcctctttaagtttgaggccctgtgccaaggacc 4141941  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 9779794 - 9779894
Alignment:
Q  26 acatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtagg 124  Q
    ||||||||||||  |||||||| | |||| | |||| |||| |||||||  |||||||||||  | ||||||| |||| |||||||||||||||||||||    
T  9779794 acatttacctacaaacaatgtacaattgatagtaaaatagtggaattctagacttttacttatgggaaaatgatatttaatgacggattttgtccgtagg 9779893  T
Q  125 t 125  Q
    |    
T  9779894 t 9779894  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 7503942 - 7503887
Alignment:
Q  76 acttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 131  Q
    |||||||| |||| ||||||||||||| ||||| ||||||||| |||| |||||||    
T  7503942 acttttacctacaaaaaaatgacatttaatgacagattttgtctgtagatacaagt 7503887  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 5031297 - 5031193
Alignment:
Q  25 gacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtag 123  Q
    |||||||||||||| |||||||||| |||| | |||| ||||||||||||| ||||||| |||  ||||||||||||||  ||||| |||||||||||||    
T  5031297 gacatttacctacgaacaatgtataattgacagtaaaatagttgaattctggacttttatttatggaaaaatgacatttagtgacgaattttgtccgtag 5031198  T
Q  124 gtaca 128  Q
    |||||    
T  5031197 gtaca 5031193  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 26554366 - 26554476
Alignment:
Q  20 aaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtc 118  Q
    |||| ||||||||| ||||||||||||||  | || | | |||||||||||||  | |||||||| |||||| |||||||||||  ||||| ||||||||    
T  26554366 aaatagacatttacttacggacaatgtattatggacagtaaaatagttgaatttcggacttttacctacagataaatgacatttagtgacgtattttgtc 26554465  T
Q  119 cgtaggtacaa 129  Q
    |||||||||||    
T  26554466 cgtaggtacaa 26554476  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 3516841 - 3516953
Alignment:
Q  20 aaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtc 118  Q
    |||| |||||||||||||||| |||||||| |||| ||| |||||||||||||||  |||||||| |||  |||||||||||||  ||||| ||||||||    
T  3516841 aaatagacatttacctacggagaatgtataattgacaataaaatagttgaattctagacttttacctacgaaaaaatgacatttagtgacgaattttgtc 3516940  T
Q  119 cgtaggtacaagt 131  Q
    |||||||| ||||    
T  3516941 cgtaggtataagt 3516953  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 29236622 - 29236550
Alignment:
Q  59 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 131  Q
    |||||||||| ||||| |||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||    
T  29236622 aaatagttgatttctggacttttacctacggaaaaatgacatttagtgacggattttgtccgtaggtacaagt 29236550  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 11167120 - 11167176
Alignment:
Q  157 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttg 213  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  11167120 caaattttgaagcccctttaagtttgaggccctgtgccaagggcctagatgcacttg 11167176  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 9860241 - 9860125
Alignment:
Q  16 agacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattt 114  Q
    |||||||| ||||||||||||| ||||||| ||  |||| | |||| |||||||||||| ||||||||| ||| |||||| || |||| |||| ||||||    
T  9860241 agacaaatagacatttacctacagacaatgcatcattgacagtaaaatagttgaattctaaacttttacctacggaaaaaagatatttaatgaaggattt 9860142  T
Q  115 tgtccgtaggtacaagt 131  Q
    |||| ||||||||||||    
T  9860141 tgtctgtaggtacaagt 9860125  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 6120084 - 6120191
Alignment:
Q  25 gacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtag 123  Q
    |||||||||| ||||| |||||||| |||| | |||| ||||||||||||| |||| |||  |  ||||||||||||||  |||| |||||||||| |||    
T  6120084 gacatttaccgacggataatgtataattgacagtaaaatagttgaattctggacttctacccaaggaaaaatgacatttagtgaccgattttgtccatag 6120183  T
Q  124 gtacaagt 131  Q
    ||||||||    
T  6120184 gtacaagt 6120191  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 26304386 - 26304314
Alignment:
Q  59 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 131  Q
    |||| |||||||| |  |||||||| |||||||||||||||||| ||||  |||||||| |||||||| ||||    
T  26304386 aaattgttgaattttagacttttacctacagaaaaatgacattttatgatagattttgttcgtaggtagaagt 26304314  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 30351220 - 30351293
Alignment:
Q  59 aaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagtg 132  Q
    ||||||||||||| || |||||||| ||   |||||||||||||  ||| |||||||| |||||||| ||||||    
T  30351220 aaatagttgaattatggacttttacctaagaaaaaatgacatttagtgatggattttgaccgtaggtgcaagtg 30351293  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 22607389 - 22607433
Alignment:
Q  168 gcccctttaagtttgaggccctgtgccaaggaccttgatgcactt 212  Q
    ||||||| ||||||| |||| |||||||||| |||||||||||||    
T  22607389 gccccttaaagtttgtggccatgtgccaagggccttgatgcactt 22607433  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 41151335 - 41151223
Alignment:
Q  18 acaaattgacatttacctacggacaatgtatagttgaa-attaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttg 116  Q
    |||||| ||||||||||||||||||||||||| ||||| || | |||||||||||| | |||||||||||  | ||||| ||||||  |||| |||||||    
T  41151335 acaaatagacatttacctacggacaatgtataattgaacataacatagttgaattccggacttttacttatgggaaaataacatttagtgacagattttg 41151236  T
Q  117 tccgtaggtacaa 129  Q
    || | ||||||||    
T  41151235 tctgcaggtacaa 41151223  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 38703384 - 38703440
Alignment:
Q  157 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttg 213  Q
    |||||||| | || ||||| ||||||| ||| |||||||||||||||||||||||||    
T  38703384 caaattttgaggctcctttgagtttgaagccttgtgccaaggaccttgatgcacttg 38703440  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 27232417 - 27232472
Alignment:
Q  157 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttg 213  Q
    |||||||| |||||||| ||| ||| ||||||||||||||||  |||||||||||||    
T  27232417 caaattttgaagcccctctaactttaaggccctgtgccaagg-gcttgatgcacttg 27232472  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19546582 - 19546648
Alignment:
Q  16 agacaaattgacatttacctacggacaatgtatagttgaaattaaatagttgaattctgaactttta 82  Q
    ||||||||  ||||||||||| |||||||||||| |||| | ||||||||||||||||| |||||||    
T  19546582 agacaaatatacatttacctatggacaatgtataattgacagtaaatagttgaattctggactttta 19546648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 15954438 - 15954324
Alignment:
Q  16 agacaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattt 114  Q
    |||||||| |||||||||||| | |||||||||| |||| | |||| |||||||||| |   ||||||| |||||||||||  |||||  ||||  |||     
T  15954438 agacaaatagacatttacctatgaacaatgtataattgacagtaaaatagttgaattataggcttttacctacagaaaaatcgcatttagtgacatatta 15954339  T
Q  115 tgtccgtaggtacaa 129  Q
    |||||||||||||||    
T  15954338 tgtccgtaggtacaa 15954324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 32188462 - 32188360
Alignment:
Q  28 atttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggta 126  Q
    ||||||||||| |||||||||| |||| | |||| |||||||||| |||| |||||| ||| |||| |||| ||||  || | |||||||||| ||||||    
T  32188462 atttacctacgaacaatgtataattgacagtaaaatagttgaattatgaatttttacctacggaaacatgatatttagtggcagattttgtccttaggta 32188363  T
Q  127 caa 129  Q
    |||    
T  32188362 caa 32188360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 11112927 - 11113015
Alignment:
Q  41 caatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaa 129  Q
    ||||||||| |||| ||| ||||| ||||||| |||| ||| || ||| |||||||||||||| |||| ||||||||| |||||||||||    
T  11112927 caatgtataattgacaataaaataattgaattatgaattttcacctac-gaaaaatgacatttaatgatggattttgttcgtaggtacaa 11113015  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 32973628 - 32973526
Alignment:
Q  19 caaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgt 117  Q
    ||||| |||||||||| ||| | |||||||| |||| ||| ||||||| ||||| |  |||||||  ||||||||||||||||||  ||||| || ||||    
T  32973628 caaatagacatttaccaacgaaaaatgtataattgagaataaaatagtagaattttagacttttagctacagaaaaatgacatttagtgacgaatgttgt 32973529  T
Q  118 ccg 120  Q
    |||    
T  32973528 ccg 32973526  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 40453257 - 40453291
Alignment:
Q  179 tttgaggccctgtgccaaggaccttgatgcacttg 213  Q
    |||||||||||||||||||| ||||||||||||||    
T  40453257 tttgaggccctgtgccaagggccttgatgcacttg 40453291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 2461476 - 2461420
Alignment:
Q  157 caaattttaaagcccctttaagtttgaggccctgtgccaaggaccttgatgcacttg 213  Q
    |||||||| | ||||||  || || |||||| |||||||||||||||||||||||||    
T  2461476 caaattttgaggcccctcaaacttagaggccatgtgccaaggaccttgatgcacttg 2461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 19116791 - 19116686
Alignment:
Q  26 acatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttgtccgtagg 124  Q
    ||||||||||||  |||||||||| |||| | |||| ||||||||||||| | |||||| || | |||||||| ||||   ||| |||||||||||||||    
T  19116791 acatttacctacatacaatgtataattgatagtaaaatagttgaattctggagttttacctaaa-aaaaatgaaatttagcgacagattttgtccgtagg 19116693  T
Q  125 tacaagt 131  Q
    |||||||    
T  19116692 tacaagt 19116686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 26618592 - 26618654
Alignment:
Q  18 acaaattgacatttacctacggacaatgtatagttga-aattaaatagttgaattctgaactt 79  Q
    |||||| ||||||||  |||||||||||||||||||| | | ||||||||||||||| |||||    
T  26618592 acaaatagacatttatatacggacaatgtatagttgacagtaaaatagttgaattctaaactt 26618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 8760073 - 8760018
Alignment:
Q  76 acttttacttacagaaaaatgacatttcatgacggattttgtccgtaggtacaagt 131  Q
    |||||||| |||| |||||||| ||||  ||||||||||||||||||| |||||||    
T  8760073 acttttacctacaaaaaaatgatatttagtgacggattttgtccgtagatacaagt 8760018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 30860697 - 30860589
Alignment:
Q  18 acaaattgacatttacctacggacaatgtatagttg-aaattaaatagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttg 116  Q
    |||||| ||||||||||||||||||| ||||| |||  | | |||||||||||||||  |||||||  ||||| ||||||||||||  |||| || ||||    
T  30860697 acaaatagacatttacctacggacaaggtataattgttagtaaaatagttgaattctagacttttatctacag-aaaatgacatttagtgacaga-tttg 30860600  T
Q  117 tccgtaggtac 127  Q
    ||||| |||||    
T  30860599 tccgttggtac 30860589  T

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Target: scaffold0426 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 2684 - 2579
Alignment:
Q  18 acaaattgacatttacctacggacaatgtatagttgaaattaaa-tagttgaattctgaacttttacttacagaaaaatgacatttcatgacggattttg 116  Q
    |||||| ||||||||| |||  | |||||||| |||| | |||| || ||||||| || |||||||| ||||||||||||||| ||  ||||| ||||||    
T  2684 acaaatagacatttacatacataaaatgtataattgatagtaaaataattgaattttggacttttacctacagaaaaatgaca-ttagtgacgaattttg 2586  T
Q  117 tccgtag 123  Q
    |||||||    
T  2585 tccgtag 2579  T

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