View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9413_low_3 (Length: 469)
Name: NF9413_low_3
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9413_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 382
Target Start/End: Complemental strand, 34489807 - 34489434
Alignment:
| Q |
7 |
tttggtggtgcaatctttcacaacatcttataatcatgttcctcggaaaatttgggacaaatggtgtaattgtcttcaagtttcatcttcaatgcatttc |
106 |
Q |
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| T |
34489807 |
tttggtggtgcaatctttcacaacatcttataatcatgttccttggaaaatttgggacaaatggtgtaat--------agtgtcatcttcaatgcatttc |
34489716 |
T |
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| Q |
107 |
aaagtttatcatatatttaggaaatataaatagatatgatatgcggataagctagattcttttggagtaattttaaaatgtaacttggtgaaattataca |
206 |
Q |
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| T |
34489715 |
aaagtttatcatatatttaggaaatataaatagatatgatatgcggataagctagattcttttggagtaattttaaaatttaacttggtgaaattataca |
34489616 |
T |
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| Q |
207 |
tttctccctttaatagcatcgacttcgatcttatgca----gtttaggcatgcccttaaaacaagtgatgatagaaaattatacatttaaaaaattattt |
302 |
Q |
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| T |
34489615 |
tttctccctttaatagcatcgacttcgatcttatgcaaactgtttaggtatgcccttaaaacaagcgatgatagaaaattatacatttaagaaattattt |
34489516 |
T |
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| Q |
303 |
aagattttgaagggtatacatgagttgacttaaaacaagaacaaaagtgt--ttagaaaatatttaaaggaccattgtttgt |
382 |
Q |
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| T |
34489515 |
aagattttgaaaggtatacatgagttgacttaaaacaagaacaaaagtgttgttagaaactatttaaaggaccattgtttgt |
34489434 |
T |
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