View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9413_low_5 (Length: 458)
Name: NF9413_low_5
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9413_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 115733 - 115299
Alignment:
| Q |
17 |
atatggttggaagagagtttggatcttgcaacttcctacaaccagcaagaagcatcgacatgagtgatattccatctccaagtgaatgatgaattctaaa |
116 |
Q |
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| T |
115733 |
atatggttggaagagagtttggatcttgcaacttcctacaaccagcaaggagcatcgacatgagtgatattccatctccaagtgaatgatgaattctaaa |
115634 |
T |
|
| Q |
117 |
tataatacacttgtgtgctctcagaatatgcatctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgatt |
216 |
Q |
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| T |
115633 |
tataatacacttgtgtgctctcagaatatgcatctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgatt |
115534 |
T |
|
| Q |
217 |
gctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctc |
316 |
Q |
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| T |
115533 |
gctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctc |
115434 |
T |
|
| Q |
317 |
gatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagctttgaatttgggtttttactgaatcaacatcgattggtttcttcaa |
416 |
Q |
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| T |
115433 |
gatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttggatttgggtttttactgaatcaacatcgattggtttcttcaa |
115334 |
T |
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| Q |
417 |
ccctatgacacagtggattatttggttcatctctg |
451 |
Q |
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| T |
115333 |
ccctatgacacagtggattatttggttcatctctg |
115299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 208 - 451
Target Start/End: Complemental strand, 14832587 - 14832347
Alignment:
| Q |
208 |
tcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgtt |
307 |
Q |
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|||||||||||||||||||| ||||| | |||||||| |||||| |||||| |||| |||||| |||||| ||||| |||||| || |||||| |
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| T |
14832587 |
tcactgattgctgattcatcctccttgtttgtagagactgaatcgttgatgatga---agattcggcggttgaggtcgattttaattggatgctagtgtt |
14832491 |
T |
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| Q |
308 |
caacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagctttgaatttgggtttttactgaatcaacatcgattgg |
407 |
Q |
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|||| |||||||||||||| |||||||| || || ||||||||||||||||||||||| ||| | || |||||| | |||||||| |||||||| ||||| |
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| T |
14832490 |
caacgcctcgatggtcacggaccatgagacttgtaaaccttggatgttggagcataacagagttctggatttggttatttactgagtcaacatcaattgg |
14832391 |
T |
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| Q |
408 |
tttcttcaaccctatgacacagtggattatttggttcatctctg |
451 |
Q |
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| T |
14832390 |
attcttcagacctatgacacagtggattatttggttcatctctg |
14832347 |
T |
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