View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9413_low_6 (Length: 452)
Name: NF9413_low_6
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9413_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 179 - 435
Target Start/End: Original strand, 53335880 - 53336139
Alignment:
| Q |
179 |
cattatggaagatgaacatgttcatataataaaagactcaaactatgatgaggtggaatccgttggagaa---gaagaagaagcactttcactttgtgat |
275 |
Q |
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| T |
53335880 |
cattatggaagatgaacatgttcatataataaaagactcaaactatgatgaggtggaatccgttggagaagaagaagaagaagcactttcactttgtgat |
53335979 |
T |
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| Q |
276 |
cttccacttaacgaaaattcatcagaaagcttagaagacaagttgtttagcataaacaatattcaacgaccaacgtcattaccagaatccaacgagttct |
375 |
Q |
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| T |
53335980 |
cttccacttaacgaaaattcatcagaaagcttagaagacaagttgtttagcataaacaatattcaacgaccaacgtcattaccagaatccaacgagttct |
53336079 |
T |
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| Q |
376 |
tcaacggtttcagcagtagcagcagctccgatatgtgtcctgcagacgacatcattttct |
435 |
Q |
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| T |
53336080 |
tcaacggtttcagcagtagcagcagctccgatatgtgtcctgcagacgacatcattttct |
53336139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 53335716 - 53335811
Alignment:
| Q |
15 |
acatcacatatatatagtgaaaaatcacacacatatataaacgcaacaaaacaactgtctcttcaccctcttcaaaactattaaattatttcctcc |
110 |
Q |
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| T |
53335716 |
acatcacatatatatagtgaaaagtcacacacatatataaacgcaacaaaacaactgtctcttcaccctcttcaaaactattaaattatttcctcc |
53335811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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