View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9413_low_9 (Length: 316)
Name: NF9413_low_9
Description: NF9413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9413_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 31942920 - 31943221
Alignment:
| Q |
11 |
acatcaaaataa-aaaattaaactttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttat |
109 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
31942920 |
acatcaaaataagaaaataaaattttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattgttttcaggaactaaatggctattaccgttat |
31943019 |
T |
|
| Q |
110 |
tcaccataattgattgactgaacctgctccatgaattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcat |
209 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31943020 |
tcaccataattgattgaccgggccttctccatgaattaccaagttgtcctacttgatcgagcaagtgaatttgagataacaatgttgcattatccctcat |
31943119 |
T |
|
| Q |
210 |
agcaatcccattagaagaacttgccaatgtattaggagattggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctatgctt |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
31943120 |
agcaatcccattaaaagaacttgccaatgtactaggagattggtgatttcctctaatccttttgggtggacctctaccagaatccatggagtctatgctt |
31943219 |
T |
|
| Q |
310 |
ct |
311 |
Q |
| |
|
|| |
|
|
| T |
31943220 |
ct |
31943221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 311
Target Start/End: Original strand, 31952125 - 31952414
Alignment:
| Q |
34 |
ttaccttgtatatgaggcgttggccaaaagtgttgcaccaaattattttcaggaactaaatggttattaccgttattcaccataattgattgactgaacc |
133 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||| |||||||||| |||||| ||||| | ||||||||||||| || ||| | |
|
|
| T |
31952125 |
ttaccttgtatatgaagtgttggttgaaagtgttgcaccaaattgttttcaggaattaaatgattattttcattattcaccataagagaccgacctggtc |
31952224 |
T |
|
| Q |
134 |
tgctccatgaattaccaagttgtcctacttgatccagcaaatgaatttgagataacaatgttgcattatccctcatagcaatcccattag---------- |
223 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||| ||| |||||||| | | |||| |
|
|
| T |
31952225 |
tactccatgaattaccaagttgttctacttgattgagcaaatgaatttgagatggcaatgttacattaccccccatagcaacctcgttagggggagaaat |
31952324 |
T |
|
| Q |
224 |
--aagaacttgccaatgtattaggagattggtgatttcctctaatccttttgggtggacctctgccatcatccatggagtctatgcttct |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
31952325 |
agaagaacttgccaatgtattaggagattggtgatttcctctaattcttttgggtggacctctaccatcatccattgagtatatgcttct |
31952414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University