View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9414_low_1 (Length: 591)

Name: NF9414_low_1
Description: NF9414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9414_low_1
NF9414_low_1
[»] chr6 (28 HSPs)
chr6 (18-591)||(17770471-17771044)
chr6 (19-292)||(1575690-1575947)
chr6 (19-230)||(696442-696654)
chr6 (119-210)||(696622-696714)
chr6 (119-199)||(1575927-1576007)
chr6 (139-199)||(31624122-31624182)
chr6 (119-210)||(23271999-23272088)
chr6 (19-98)||(23272057-23272135)
chr6 (141-189)||(769180-769228)
chr6 (155-198)||(6647420-6647463)
chr6 (149-192)||(34403894-34403937)
chr6 (140-198)||(10616692-10616750)
chr6 (140-198)||(20368159-20368217)
chr6 (139-192)||(3738108-3738161)
chr6 (148-192)||(4080955-4080999)
chr6 (148-192)||(5566164-5566208)
chr6 (148-192)||(33887869-33887913)
chr6 (139-174)||(26709793-26709828)
chr6 (140-198)||(2263225-2263283)
chr6 (151-197)||(4246444-4246490)
chr6 (209-267)||(8331699-8331757)
chr6 (148-198)||(28641736-28641786)
chr6 (139-192)||(7931704-7931757)
chr6 (140-193)||(8035127-8035180)
chr6 (151-192)||(9667975-9668016)
chr6 (140-193)||(33832252-33832305)
chr6 (148-192)||(2027393-2027437)
chr6 (148-192)||(22743520-22743564)
[»] chr7 (17 HSPs)
chr7 (19-292)||(15740429-15740686)
chr7 (19-230)||(43219662-43219874)
chr7 (19-182)||(11047916-11048079)
chr7 (119-210)||(43219602-43219694)
chr7 (119-210)||(11048047-11048139)
chr7 (119-199)||(15740369-15740449)
chr7 (140-198)||(19719039-19719097)
chr7 (140-193)||(39967958-39968012)
chr7 (144-192)||(20888377-20888425)
chr7 (139-193)||(34035955-34036010)
chr7 (139-193)||(9038150-9038203)
chr7 (150-192)||(25511665-25511707)
chr7 (151-192)||(36598346-36598387)
chr7 (143-184)||(43250681-43250722)
chr7 (151-191)||(6857329-6857369)
chr7 (148-192)||(22551392-22551436)
chr7 (150-198)||(25596066-25596114)
[»] chr3 (40 HSPs)
chr3 (133-370)||(5396075-5396295)
chr3 (19-182)||(39723258-39723421)
chr3 (307-458)||(5391726-5391869)
chr3 (119-210)||(39723198-39723290)
chr3 (133-198)||(5391912-5391977)
chr3 (148-193)||(53762381-53762426)
chr3 (139-184)||(45541618-45541663)
chr3 (151-198)||(3044249-3044296)
chr3 (139-198)||(34954115-34954173)
chr3 (139-198)||(39602188-39602247)
chr3 (139-198)||(54837012-54837071)
chr3 (144-198)||(52440645-52440699)
chr3 (157-198)||(25925775-25925816)
chr3 (149-198)||(36101601-36101650)
chr3 (149-198)||(36139911-36139960)
chr3 (140-192)||(29427624-29427676)
chr3 (19-67)||(39602228-39602276)
chr3 (150-193)||(5166361-5166404)
chr3 (140-198)||(21367700-21367759)
chr3 (148-198)||(2152165-2152215)
chr3 (148-198)||(3015830-3015880)
chr3 (140-193)||(26878238-26878292)
chr3 (140-190)||(34707475-34707525)
chr3 (160-198)||(40665462-40665500)
chr3 (140-198)||(53952081-53952139)
chr3 (140-198)||(54180759-54180817)
chr3 (152-193)||(13804815-13804856)
chr3 (151-192)||(20192596-20192637)
chr3 (148-193)||(21754755-21754800)
chr3 (139-195)||(23816254-23816311)
chr3 (139-192)||(27290879-27290932)
chr3 (151-192)||(37273173-37273214)
chr3 (151-192)||(42745077-42745118)
chr3 (142-198)||(23808045-23808101)
chr3 (139-191)||(24624250-24624302)
chr3 (27-95)||(28622025-28622093)
chr3 (19-75)||(34924556-34924612)
chr3 (140-198)||(36769950-36770005)
chr3 (148-192)||(38971297-38971341)
chr3 (140-192)||(49465644-49465696)
[»] chr8 (28 HSPs)
chr8 (424-493)||(41066752-41066821)
chr8 (359-418)||(41066667-41066729)
chr8 (139-197)||(3254259-3254317)
chr8 (139-193)||(779039-779093)
chr8 (140-193)||(1930073-1930127)
chr8 (140-198)||(8629489-8629547)
chr8 (151-192)||(9835890-9835931)
chr8 (142-198)||(3161604-3161660)
chr8 (142-198)||(12851209-12851265)
chr8 (148-192)||(42215293-42215337)
chr8 (141-192)||(10383924-10383975)
chr8 (139-198)||(11770989-11771048)
chr8 (149-192)||(41606891-41606934)
chr8 (151-193)||(11569447-11569489)
chr8 (140-198)||(13459678-13459736)
chr8 (156-198)||(20672783-20672825)
chr8 (148-198)||(30389132-30389182)
chr8 (150-191)||(2594986-2595027)
chr8 (157-198)||(11118993-11119034)
chr8 (151-192)||(11185260-11185301)
chr8 (155-192)||(12361231-12361268)
chr8 (148-193)||(43368687-43368732)
chr8 (140-184)||(2458545-2458589)
chr8 (158-198)||(3600735-3600775)
chr8 (166-198)||(6525625-6525657)
chr8 (148-192)||(7918433-7918477)
chr8 (158-198)||(14339602-14339642)
chr8 (148-200)||(14949897-14949949)
[»] chr1 (41 HSPs)
chr1 (140-198)||(10744334-10744392)
chr1 (141-192)||(35925729-35925780)
chr1 (140-192)||(37811891-37811943)
chr1 (140-196)||(4549883-4549939)
chr1 (150-198)||(6292526-6292574)
chr1 (148-198)||(10199395-10199445)
chr1 (140-198)||(37842334-37842392)
chr1 (19-100)||(2294882-2294963)
chr1 (148-193)||(38170677-38170722)
chr1 (119-192)||(6262059-6262128)
chr1 (149-193)||(10854771-10854815)
chr1 (140-184)||(38001643-38001687)
chr1 (143-198)||(4699597-4699652)
chr1 (139-198)||(11639394-11639453)
chr1 (151-198)||(11695894-11695941)
chr1 (151-198)||(28689442-28689489)
chr1 (151-198)||(30815643-30815690)
chr1 (157-192)||(47917275-47917310)
chr1 (139-193)||(1565513-1565567)
chr1 (18-84)||(7137015-7137081)
chr1 (144-198)||(7218057-7218111)
chr1 (150-192)||(7262507-7262549)
chr1 (148-194)||(24460394-24460440)
chr1 (142-192)||(31118082-31118132)
chr1 (140-198)||(31517719-31517777)
chr1 (148-198)||(37593671-37593721)
chr1 (140-198)||(38247032-38247090)
chr1 (148-193)||(4445746-4445791)
chr1 (140-193)||(4481968-4482021)
chr1 (151-184)||(4549714-4549747)
chr1 (156-193)||(5886989-5887026)
chr1 (151-192)||(27140517-27140558)
chr1 (151-192)||(29723528-29723569)
chr1 (148-193)||(39270412-39270457)
chr1 (139-192)||(45394154-45394207)
chr1 (157-193)||(5276331-5276367)
chr1 (148-192)||(12477274-12477318)
chr1 (158-198)||(30257716-30257756)
chr1 (150-198)||(34290269-34290317)
chr1 (140-192)||(35669011-35669063)
chr1 (166-198)||(38882917-38882949)
[»] chr5 (24 HSPs)
chr5 (47-98)||(41059904-41059955)
chr5 (150-193)||(15406001-15406044)
chr5 (140-198)||(42100344-42100403)
chr5 (139-193)||(7674686-7674740)
chr5 (140-198)||(10125697-10125755)
chr5 (148-198)||(13604836-13604886)
chr5 (148-198)||(17258870-17258920)
chr5 (148-193)||(21768184-21768229)
chr5 (140-192)||(499710-499762)
chr5 (139-198)||(18857376-18857435)
chr5 (140-187)||(39248143-39248190)
chr5 (151-198)||(41957441-41957488)
chr5 (150-192)||(1899193-1899235)
chr5 (139-193)||(2568696-2568750)
chr5 (151-193)||(22020357-22020399)
chr5 (151-192)||(2880537-2880578)
chr5 (142-199)||(3977340-3977397)
chr5 (19-87)||(7984952-7985021)
chr5 (19-87)||(12425555-12425623)
chr5 (150-198)||(14331400-14331448)
chr5 (140-192)||(17368715-17368767)
chr5 (19-87)||(25461334-25461402)
chr5 (148-192)||(37794685-37794729)
chr5 (139-175)||(42646947-42646983)
[»] chr2 (34 HSPs)
chr2 (139-197)||(5902527-5902585)
chr2 (139-192)||(1647275-1647328)
chr2 (140-198)||(40682373-40682432)
chr2 (141-192)||(44438819-44438870)
chr2 (140-190)||(787373-787423)
chr2 (144-198)||(35538674-35538728)
chr2 (144-198)||(35557108-35557162)
chr2 (140-192)||(28677638-28677690)
chr2 (141-189)||(40158760-40158808)
chr2 (140-192)||(43530090-43530142)
chr2 (140-175)||(1801724-1801759)
chr2 (139-198)||(44606088-44606147)
chr2 (140-174)||(4350747-4350781)
chr2 (116-198)||(7035525-7035604)
chr2 (148-198)||(12313160-12313210)
chr2 (150-192)||(29316764-29316806)
chr2 (140-198)||(35378511-35378569)
chr2 (148-198)||(35379003-35379053)
chr2 (150-192)||(43827942-43827984)
chr2 (148-193)||(680541-680586)
chr2 (145-198)||(1056113-1056166)
chr2 (139-198)||(7928275-7928336)
chr2 (148-193)||(33256778-33256823)
chr2 (142-191)||(33941949-33941998)
chr2 (151-192)||(34652026-34652067)
chr2 (139-192)||(41809223-41809276)
chr2 (140-192)||(41812070-41812123)
chr2 (152-192)||(1939323-1939363)
chr2 (141-193)||(2091014-2091066)
chr2 (148-192)||(10285899-10285943)
chr2 (145-193)||(10567095-10567143)
chr2 (19-87)||(12464491-12464559)
chr2 (140-192)||(38809365-38809417)
chr2 (142-198)||(43717117-43717173)
[»] scaffold0004 (1 HSPs)
scaffold0004 (149-192)||(98628-98671)
[»] chr4 (24 HSPs)
chr4 (148-198)||(28300286-28300336)
chr4 (149-198)||(23819122-23819171)
chr4 (140-189)||(37863933-37863982)
chr4 (142-198)||(38515866-38515920)
chr4 (140-184)||(1137759-1137803)
chr4 (148-192)||(1965980-1966024)
chr4 (148-192)||(17223023-17223067)
chr4 (140-192)||(39178245-39178297)
chr4 (139-198)||(49939928-49939988)
chr4 (20-95)||(35571650-35571725)
chr4 (150-193)||(56249562-56249605)
chr4 (148-194)||(7368041-7368087)
chr4 (142-192)||(20936210-20936260)
chr4 (140-190)||(23459669-23459719)
chr4 (140-190)||(39886632-39886682)
chr4 (148-193)||(2996611-2996656)
chr4 (140-193)||(25571298-25571351)
chr4 (151-192)||(29263409-29263450)
chr4 (26-86)||(16200006-16200066)
chr4 (157-197)||(19250580-19250620)
chr4 (140-184)||(19304973-19305017)
chr4 (140-192)||(29388823-29388875)
chr4 (138-182)||(42641616-42641660)
chr4 (147-198)||(55414405-55414457)
[»] scaffold0608 (1 HSPs)
scaffold0608 (140-193)||(9616-9669)
[»] scaffold0221 (1 HSPs)
scaffold0221 (153-193)||(2804-2844)


Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Original strand, 17770471 - 17771044
Alignment:
Q  18 attttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770471 attttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgt 17770570  T
Q  118 tttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatcatcgaagatactgactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17770571 tttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgctttcaacttatttttataatcatcgaagatactgactt 17770670  T
Q  218 aacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccctgaataattttggtgataatatatag 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17770671 aacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtccattgtcaaaccctgaataattttggtgataatatatag 17770770  T
Q  318 tttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaagagatttaagaga 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770771 tttgaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaagagatttaagaga 17770870  T
Q  418 gaagcaagtgaggaaaagtgatttatataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatgataaatggtgtctttttgagcttgt 517  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17770871 gaagcaagtgaggaaaagtgatttatataaaagaaagaaaggatgtggtaaaatagaaagttgaaacaaataatgataaatggtgtctttttgagcttgt 17770970  T
Q  518 aaccttttgatttcggctgacagtgctgttttttctggtttttctgctgcatttcaactcttctgcttcgtttt 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17770971 aaccttttgatttcggctgacagtgctgttttttctggtttttctgctgcatttcaactcttctacttcgtttt 17771044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 1575947 - 1575690
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||| ||||||||||||||| |||   ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||  ||  |||||||||||    
T  1575947 tttttaacttattttcataattca---aagataggttatgaaaatagctaataggttatgcaaatacaatataacttgatattggcactaactaattgtt 1575851  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatga-catgttcataaggtgttttcaacttatttttataatcatcgaagatactgactt 217  Q
    ||||||             ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||| |||    
T  1575850 ttgtga-------------caagaacttatgaaaacagcttatgaacatgtccataaggtgttttcaacttattttcataatcattgaagatactggctt 1575764  T
Q  218 aacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct 292  Q
    ||||| |||||||||| | | |||||||||||||| |||||||||| |||||||||||||||| || ||||||||    
T  1575763 aacttgattttcccatttgctctttgagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct 1575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 696654 - 696442
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||||| |||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| |||    
T  696654 ttttcagcttattctcataagtcatcgaagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagtt 696555  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgactt 217  Q
    |||| |||||||| |||| ||| ||||| |||||||||||||||||||||||||||| |||||| | |||||  |  ||| |||||||||||  ||| ||    
T  696554 ttgtaagactgttgtttggcaaaaacttatgaaaacagcttatgacatgttcataagctgtttttagcttatcctcttaagtcatcgaagatcttgattt 696455  T
Q  218 aacttaattttcc 230  Q
    |||||| ||||||    
T  696454 aacttagttttcc 696442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 696714 - 696622
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 210  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  696714 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 696622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 1576007 - 1575927
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 199  Q
    |||||||| |||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |||||    
T  1576007 ttgtgagaatgttgtttggcaagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 1575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 31624182 - 31624122
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 199  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  31624182 aagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataat 31624122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 23271999 - 23272088
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatcatcgaagata 210  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||  | ||||||| |||||||| |||||| | |||| |||||||||||    
T  23271999 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgac--gatcataagctgttttcagcttattctcataagcatcgaagata 23272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 23272057 - 23272135
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgat 98  Q
    |||||| |||||| ||||||| |||| |||||||| ||| ||||||||||||||||||||||||  ||| ||||||||||    
T  23272057 ttttcagcttattctcataag-catcgaagataggctattaaaatagctaatagtttatgcaaaggcaatataacttgat 23272135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 769228 - 769180
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 189  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  769228 gaacttatgaaaacatcttatgacatgttcataagctgttttcaactta 769180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 6647463 - 6647420
Alignment:
Q  155 agcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  6647463 agcttatgacatgttcataagatgttttcaacttattttcataa 6647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 34403937 - 34403894
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  34403937 gaaaacaacttatgacatgttcataaggtgttttcaccttattt 34403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 10616692 - 10616750
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  10616692 agaacttatcaaaacaccttatgacatgttcataagctgttttcagtttatttttataa 10616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 20368159 - 20368217
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||| ||||||||||||||||||| |  |||||||||||||| ||||    
T  20368159 agaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataa 20368217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 3738161 - 3738108
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| |||||| |||||||||||||||||| |||||| || |||||||||||||    
T  3738161 aagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttattt 3738108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 4080999 - 4080955
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||    
T  4080999 tgaaaacaacttatgccatgttcataagttgttttcaacttattt 4080955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 5566164 - 5566208
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||    
T  5566164 tgaaaacagcttattacatgtccataagttgttttcaacttattt 5566208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 33887913 - 33887869
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||    
T  33887913 tgaaaatagcttatgacatgttcacaagttgttttcaacttattt 33887869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 26709793 - 26709828
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataa 174  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26709793 aagaacttgtgaaaacagcttatgacatgtttataa 26709828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 2263283 - 2263225
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||| | |||||||||||||||  ||||||||||||| ||| |||||    
T  2263283 agaacttatgaaaacaacatatgacatgttcatagcgtgttttcaacttctttctataa 2263225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 4246490 - 4246444
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttata 197  Q
    ||||| || ||||||||| |||||| |||||||||||||||||||||    
T  4246490 aaacaactcatgacatgtccataagctgttttcaacttatttttata 4246444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 8331757 - 8331699
Alignment:
Q  209 tactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaag 267  Q
    |||||| ||||||| |||| ||||| | |||| ||| ||||||||||||||||||||||    
T  8331757 tactgatttaacttgatttacccatttgccctctgacaaggataccaaagctaccaaag 8331699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 28641736 - 28641786
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||| ||||||||||||| |||||| | |||||||| ||||    
T  28641736 tgaaaacagcttataacatgttcataagctgtttttagcttattttcataa 28641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 7931704 - 7931757
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| ||| |||||||| |||||||||||||| |||| |||||||| |||||||    
T  7931704 aagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttattt 7931757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 8035127 - 8035180
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||  ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  8035127 agaacttaagaaaacaacttatgacatggtcataacttgttttcaacttatttt 8035180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 9667975 - 9668016
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttattt 9668016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 33832252 - 33832305
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||| |||||||| ||||||||||||| ||||| |||||| | ||||||||    
T  33832252 agaacttatgaaaacaacttatgacatgtttataagttgtttttagcttatttt 33832305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2027393 - 2027437
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||    
T  2027393 tgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 22743564 - 22743520
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  22743564 tgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 15740429 - 15740686
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||| ||||||||||||||| |||   ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||  ||  |||||||||||    
T  15740429 tttttaacttattttcataattca---aagataggttatgaaaatagctaataggttatgcaaatacaatataacttgatattggcactaactaattgtt 15740525  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatga-catgttcataaggtgttttcaacttatttttataatcatcgaagatactgactt 217  Q
    ||||||             ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||| |||    
T  15740526 ttgtga-------------caagaacttatgaaaacagcttatgaacatgtccataaggtgttttcaacttattttcataatcattgaagatactggctt 15740612  T
Q  218 aacttaattttcccatataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct 292  Q
    ||||| |||||||||| | | |||||||||||||| |||||||||| |||||||||||||||| || ||||||||    
T  15740613 aacttgattttcccatttgctctttgagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct 15740686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 43219662 - 43219874
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||||| |||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| |||    
T  43219662 ttttcagcttattctcataagtcatcgaagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagtt 43219761  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgactt 217  Q
    |||| |||||||| |||| ||| ||||| |||||||||||||||||||||||||||| |||||| | |||||  |  ||| |||||||||||  ||| ||    
T  43219762 ttgtaagactgttgtttggcaaaaacttatgaaaacagcttatgacatgttcataagctgtttttagcttatcctcttaagtcatcgaagatcttgattt 43219861  T
Q  218 aacttaattttcc 230  Q
    |||||| ||||||    
T  43219862 aacttagttttcc 43219874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 11048079 - 11047916
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||||| |||||| |||||||||||| |||||||  ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| |||    
T  11048079 ttttcagcttattctcataagtcatcgaagatagcctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagtt 11047980  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgtttt 182  Q
    |||| |||||||| |||| ||| ||||| | |||||| ||||||||||||||||||| ||||||    
T  11047979 ttgtaagactgttgtttggcaaaaacttataaaaacaacttatgacatgttcataagctgtttt 11047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 43219602 - 43219694
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 210  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  43219602 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 43219694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 11048139 - 11048047
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 210  Q
    ||||||||||||| |||| ||||||||| | |||||| ||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  11048139 ttgtgagactgttatttggcaagaacttatcaaaacaacttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 11048047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 15740369 - 15740449
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 199  Q
    |||||||| |||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |||||    
T  15740369 ttgtgagaatgttgtttggcaagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 15740449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 19719097 - 19719039
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||| ||||||||||||||||||  |||||||| ||||| |||||||    
T  19719097 agaacttatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataa 19719039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 39968012 - 39967958
Alignment:
Q  140 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttt 193  Q
    ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  39968012 agaacttatgaaaacagcttatggcattgttcataagctgttttcaacttatttt 39967958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 20888377 - 20888425
Alignment:
Q  144 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||| |||||| |||||||||||| |||||||| |||||||    
T  20888377 cttgtgaaaacaacttatgccatgttcataagttgttttcagcttattt 20888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 34036010 - 34035955
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttt 193  Q
    |||||||| |||||| | |||||||||| ||||||||| |||||||||||||||||    
T  34036010 aagaacttatgaaaataacttatgacattgttcataagttgttttcaacttatttt 34035955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 9038203 - 9038150
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| | |||||||||||||||||||||||||  |||||||| ||||||||    
T  9038203 aagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttatttt 9038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 25511707 - 25511665
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||||||||||  ||| ||||||||||||    
T  25511707 aaaacagcttatgacatgttcataaattgtcttcaacttattt 25511665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 36598346 - 36598387
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| ||||||||||||||||||| |||||||| |||||||    
T  36598346 aaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 43250681 - 43250722
Alignment:
Q  143 acttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    |||| ||||||||||||||||||||||| |||| ||||||||    
T  43250681 acttatgaaaacagcttatgacatgttcgtaagttgttttca 43250722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 6857329 - 6857369
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatt 191  Q
    |||||||||||| ||||| |||||| |||||||||||||||    
T  6857329 aaacagcttatgccatgtccataagttgttttcaacttatt 6857369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 22551392 - 22551436
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||||||||| | | |||||||| |||||||    
T  22551392 tgaaaacagcttatgacatgttcaaatgttgttttcagcttattt 22551436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 25596114 - 25596066
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||| |||  |||| ||||||||||||||||| ||||    
T  25596114 aaaacagcttatgacaagttactaagttgttttcaacttattttcataa 25596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 133 - 370
Target Start/End: Complemental strand, 5396295 - 5396075
Alignment:
Q  133 tttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgacttaacttaattttccc 231  Q
    |||| ||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  5396295 tttgccaagaacttattgaaacagcttatgacatgttaataaggtgttttcagcttattttcataagtcatcgaagatactgatttaacttgattttccc 5396196  T
Q  232 atataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccctgaataattttggtgataatatatagtttaaatgttaaca 331  Q
    || ||||||||||||||||||||                  ||||||||  | |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  5396195 atttaccctttgagaaggatacc------------------aaagtccccggccaaaccctgaataattatggtgataaaatatagtttgaatgttaaca 5396114  T
Q  332 atgtgatgtgaacaataaggaaaagttagagaagtgaag 370  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5396113 atgtgatgtgaacaataaggaaaagttagagaagtgaag 5396075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 39723258 - 39723421
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgtt 118  Q
    |||||| |||||| |||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| |||    
T  39723258 ttttcagcttattctcataagtcatcgaagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagtt 39723357  T
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgtttt 182  Q
    |||| |||||||| |||| ||| ||||| |||||||||||||||||||||||||||| ||||||    
T  39723358 ttgtaagactgttgtttggcaaaaacttatgaaaacagcttatgacatgttcataagctgtttt 39723421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 307 - 458
Target Start/End: Complemental strand, 5391869 - 5391726
Alignment:
Q  307 ataatatatagtttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaaga 406  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||      
T  5391869 ataacatatagtttgaatgttaacaatgtgatgtgaacaataaagaaaagttagagaagtgaaggcttaagaagagattggttgtgatagagggtgaatt 5391770  T
Q  407 gatttaagagagaagcaagtgaggaaaagtgatttatataacagaaagaaag 458  Q
    |||||||||||||        |||||||||||||||||||| ||||||||||    
T  5391769 gatttaagagaga--------aggaaaagtgatttatataaaagaaagaaag 5391726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 39723198 - 39723290
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 210  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  39723198 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 39723290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 5391977 - 5391912
Alignment:
Q  133 tttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5391977 tttggcaataacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 53762381 - 53762426
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  53762381 tgaaaacagcttatgacatgttcataagctgttttcaacttatttt 53762426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 45541663 - 45541618
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  45541663 aagaacttatgaaaacagcttatgacatgttcataagctgttttca 45541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 3044249 - 3044296
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataa 3044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 34954173 - 34954115
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||    
T  34954173 aagaacttgtgaaaacagct-atgacatgttcatgagctgttttcagcttattttcataa 34954115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 39602188 - 39602247
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| ||| |||| ||||||||||||||||||||||  ||||||||||||||||| ||||    
T  39602188 aagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataa 39602247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 54837012 - 54837071
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| || |||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  54837012 aagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataa 54837071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 52440645 - 52440699
Alignment:
Q  144 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| || ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  52440645 cttgtgagaatagcttatgacatgttcataagttgttttcaactaattttcataa 52440699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 25925816 - 25925775
Alignment:
Q  157 cttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  25925816 cttatgacatgttcataagctgttttcaacttattttcataa 25925775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 36101650 - 36101601
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataa 36101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 36139960 - 36139911
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataa 36139911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 29427624 - 29427676
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||| || |||||||||||||||| | ||||||||||||||    
T  29427624 agaacttatgaaaacacctaatgacatgttcataagctattttcaacttattt 29427676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39602228 - 39602276
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagct 67  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagct 39602276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 5166404 - 5166361
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||    
T  5166404 aaaacagcatatgacatgttcataagctgttttcatcttatttt 5166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 21367759 - 21367700
Alignment:
Q  140 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||||||||||||| |||||| ||| |||||||| |||||||| ||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataa 21367700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 2152165 - 2152215
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||||||||||| |||| |||||||||||| ||| |||||    
T  2152165 tgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataa 2152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 3015830 - 3015880
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||||||||| |||||| |||||||| |||||||| ||||    
T  3015830 tgaaaacaacttatgacatgtccataagatgttttcatcttattttaataa 3015880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 26878292 - 26878238
Alignment:
Q  140 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||| ||||||||    
T  26878292 agaacttgtgaaaatagcttatgacattgttcataaactgttttcagcttatttt 26878238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 34707475 - 34707525
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 190  Q
    ||||||| |||||||| ||| |||||||| |||||| ||||||||||||||    
T  34707475 agaacttttgaaaacaacttgtgacatgtccataagttgttttcaacttat 34707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 40665500 - 40665462
Alignment:
Q  160 atgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataa 40665462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 53952139 - 53952081
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| ||||||||||| || |||||||||| || |||||||| |||||||| ||||    
T  53952139 agaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataa 53952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 54180759 - 54180817
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||  |||||||||||||||||| |||||| |||||| | ||||||| |||||    
T  54180759 agaacttgtagaaacagcttatgacatgtccataagttgtttttagcttatttatataa 54180817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 13804856 - 13804815
Alignment:
Q  152 aacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||| |||||||||||| |||||| |||||||||||||||||    
T  13804856 aacaacttatgacatgtccataagctgttttcaacttatttt 13804815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 20192596 - 20192637
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  20192596 aaacagcttatgacatgtccataagctgttttcaactcattt 20192637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 21754800 - 21754755
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| |||||||||||||||| || |||||||||||| ||||    
T  21754800 tgaaaacaacttatgacatgttcatcagttgttttcaacttgtttt 21754755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 23816311 - 23816254
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttattttta 195  Q
    |||||||||  ||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  23816311 aagaacttgaaaaaacaggttatggcattgttcataagctgttttcaacttattttta 23816254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 27290879 - 27290932
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| ||| ||||||||||||||||||||  |||||| |||||||| |||||||    
T  27290879 aagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttattt 27290932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 37273214 - 37273173
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  37273214 aaacaacttatgacatgtccataagttgttttcaacttattt 37273173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 42745118 - 42745077
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| ||||||||||||||||||| |||||||| |||||||    
T  42745118 aaacaacttatgacatgttcataagttgttttcatcttattt 42745077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 23808045 - 23808101
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| ||||| |||||||||||||||||| ||  |||||||| |||||||| ||||    
T  23808045 aacttatgaaagcagcttatgacatgttcacaaattgttttcatcttattttcataa 23808101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 24624302 - 24624250
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatt 191  Q
    |||| ||| ||||||||||||||||||||| |||||  |||||||| ||||||    
T  24624302 aagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 28622025 - 28622093
Alignment:
Q  27 ttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataactt 95  Q
    ||||||||||||||  || ||||||| ||||||||| |||| |||| |||  |||||||||| ||||||    
T  28622025 ttattttcataagttctcgaagatagtttatgaaaacagcttatagcttacacaaaaacaacttaactt 28622093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34924556 - 34924612
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagttt 75  Q
    |||||| ||||||||||||||   || ||||||| |||||||||||||| |||||||    
T  34924556 ttttcagcttattttcataagctctctaagatagcttatgaaaatagctcatagttt 34924612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 36769950 - 36770005
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| ||||||||||| |||||||||||| ||   ||||||| |||||||||||||    
T  36769950 agaacttatgaaaacagctcatgacatgttcacaa---gttttcatcttatttttataa 36770005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 38971341 - 38971297
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||||    
T  38971341 tgaaaacagtttataacatgttcgtaagctgttttcaacttattt 38971297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 49465644 - 49465696
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||||||||| |||||||||| |||| |||| | |||||||    
T  49465644 agaacttatgaaaacagcttattacatgttcattaggttttttaagcttattt 49465696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 41066752 - 41066821
Alignment:
Q  424 agtgaggaaaagtgatttatataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatga 493  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||    
T  41066752 agtgaggaaaagtgatttatataaaagaaagaaaggatgttgtaaaacagaaagttgggacaattaatga 41066821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 41066667 - 41066729
Alignment:
Q  359 agagaagtgaagggttaataaga---gattggttgtgatagagggtgaagagatttaagagag 418  Q
    ||||||||||||||||| |||||   |||||| ||||||||||||||||||||||||||||||    
T  41066667 agagaagtgaagggttattaagaagagattggctgtgatagagggtgaagagatttaagagag 41066729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 3254317 - 3254259
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttata 197  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  3254317 aagaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctata 3254259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 779039 - 779093
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  779039 aagaacttacgaaaacaacttatgacatgttcataagttgttttcatcttatttt 779093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 1930127 - 1930073
Alignment:
Q  140 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  1930127 agaacttgtgaaaacagtttatgacattgttcataagctgttttcagcttatttt 1930073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 8629547 - 8629489
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||||||| | |||||||    
T  8629547 agaacttatgaaaacaacttatgacatgatcataagttgttttcaacttctatttataa 8629489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 9835890 - 9835931
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  9835890 aaacagcttatgacatgttcataagctgttttcatcttattt 9835931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 3161604 - 3161660
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| |||||| | ||||||||||||||||||  |||||||| |||||||||||||    
T  3161604 aacttatgaaaataacttatgacatgttcataaaatgttttcagcttatttttataa 3161660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 12851265 - 12851209
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| |||||||||||||| ||||||||||||| |||||||  |||||||| ||||    
T  12851265 aacttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataa 12851209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 42215293 - 42215337
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||    
T  42215293 tgaaaacagcttatgacttgttcataagctgttttcagcttattt 42215337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 10383975 - 10383924
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||| ||||||||||||||||||| |||||||| ||||| || |||||||    
T  10383975 gaacttatgaaaacagcttatgacattttcataagctgtttacagcttattt 10383924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 11770989 - 11771048
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||||| ||||||| ||||  ||| | ||||||||||||||||||||||    
T  11770989 aagaacttatgaaaacaacttatgatatgtctatacgttgttttcaacttatttttataa 11771048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 41606891 - 41606934
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  41606891 gaaaacagcttatgacatgttcaaaagttgttttcagcttattt 41606934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 11569447 - 11569489
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||| |||||| |||||||| ||||||||    
T  11569447 aaacagcttatgacatgtacataagttgttttcagcttatttt 11569489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 13459736 - 13459678
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| ||||||||||||||||||| |||||||  |||||||| | |||||| ||||    
T  13459736 agaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataa 13459678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 20672825 - 20672783
Alignment:
Q  156 gcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||||| |||||||| |||||||| ||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataa 20672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 30389182 - 30389132
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||| |||| |||||||||||||||| |||||||| |||||||| ||||    
T  30389182 tgaaaatagctaatgacatgttcataagttgttttcagcttattttcataa 30389132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 2594986 - 2595027
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatt 191  Q
    |||||| ||||||||||||||||||| |||||||| ||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttatt 2595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 11118993 - 11119034
Alignment:
Q  157 cttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||| |||||||| | |||||||||||    
T  11118993 cttatgacatgttcataagctgttttcagcatatttttataa 11119034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 11185301 - 11185260
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||    
T  11185301 aaacatcttataacatgttcataagttgttttcaacttattt 11185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 12361268 - 12361231
Alignment:
Q  155 agcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  12361268 agcttatgacatgtccataagctgttttcaacttattt 12361231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 43368687 - 43368732
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| |||||||||||||||| || | |||||||||||||||    
T  43368687 tgaaaacaacttatgacatgttcattagctattttcaacttatttt 43368732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 2458545 - 2458589
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    ||||||| |||| |||||||||| |||||||||||| ||||||||    
T  2458545 agaacttatgaagacagcttatggcatgttcataagctgttttca 2458589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 3600735 - 3600775
Alignment:
Q  158 ttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  3600735 ttatgacatgtccataagttgttttcaacttattttcataa 3600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 6525625 - 6525657
Alignment:
Q  166 tgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||| ||||||||||||||||||||||    
T  6525625 tgttcataagctgttttcaacttatttttataa 6525657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 7918433 - 7918477
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| |||| |||||||||||||| ||||| ||||||||||    
T  7918433 tgaaaacaacttaagacatgttcataagctgtttccaacttattt 7918477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 14339602 - 14339642
Alignment:
Q  158 ttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  14339602 ttatgacatgtccataagttgttttcaacttattttcataa 14339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 14949949 - 14949897
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatc 200  Q
    |||||| | |||||||||||| |||||| |||||||| ||||||| |||||||    
T  14949949 tgaaaataacttatgacatgtccataagctgttttcagcttatttctataatc 14949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 10744392 - 10744334
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  10744392 agaacttgtgaaaacagcttatggcatgttcataagctgttttcatcttatttttataa 10744334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 35925780 - 35925729
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattt 35925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 37811943 - 37811891
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  37811943 agaacttatgaaaacagcttatgacatgttcataaactgttttcaacttattt 37811891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 4549939 - 4549883
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttat 196  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||    
T  4549939 agaacttctgaaaacagattatgacatgttcataagttgttttcagcttattcttat 4549883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 6292574 - 6292526
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 10199395 - 10199445
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||| ||||    
T  10199395 tgaaaatagcttatgacatgttcataagttgttttcagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 37842334 - 37842392
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||| || ||||||||||||||||  ||||||| |||||||||||||    
T  37842334 agaacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataa 37842392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 2294963 - 2294882
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatat 100  Q
    |||||| ||||||||| |||||  || ||||||| |||||||||||||| |||| |||| |||||||||  |||||| ||||    
T  2294963 ttttcaccttattttcgtaagttctccaagatagtttatgaaaatagcttatagcttatccaaaaacaatttaactttatat 2294882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 38170677 - 38170722
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||    
T  38170677 tgaaaacagcttatgacatgttcataagttgttttcagcttgtttt 38170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 6262128 - 6262059
Alignment:
Q  119 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||    |||||| ||| ||| |||| ||||||||||||||||||| | ||||||||||||||    
T  6262128 ttgtgagactgttt----acaagagcttatgagaacaacttatgacatgttcataagctattttcaacttattt 6262059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 10854815 - 10854771
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||    
T  10854815 gaaaacagcttatgacatgttcacaagctgttttcagcttatttt 10854771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 38001687 - 38001643
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||    
T  38001687 agaacttatgaaaacagcttatgacctgttcataagttgttttca 38001643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 4699597 - 4699652
Alignment:
Q  143 acttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| |||||||| ||||||||||||||||||| |||||| | ||||||| |||||    
T  4699597 acttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataa 4699652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 11639394 - 11639453
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| ||| ||||||||||||||||||||| |||||| |||||| | |||||||| ||||    
T  11639394 aagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataa 11639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 11695941 - 11695894
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||| ||||||||||| |||||| ||||||||||||||||| ||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataa 11695894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 28689442 - 28689489
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataa 28689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 30815643 - 30815690
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||||||  |||||||| |||||||| ||||    
T  30815643 aaacagcttatgacatgttcataaaatgttttcagcttattttcataa 30815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 192
Target Start/End: Complemental strand, 47917310 - 47917275
Alignment:
Q  157 cttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47917310 cttatgacatgttcataagttgttttcaacttattt 47917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 1565513 - 1565567
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||  ||| |||||||||||||||| |||||| |||||||| ||||||||    
T  1565513 aagaacttaggaagacagcttatgacatgtgcataagctgttttcagcttatttt 1565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 7137015 - 7137081
Alignment:
Q  18 attttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaa 84  Q
    ||||||| |||||||||||||||  || ||||||| ||||||||| |||| |||| |||| ||||||    
T  7137015 attttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattatacaaaaa 7137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 7218057 - 7218111
Alignment:
Q  144 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||  ||||||||| ||||| ||| ||||||||||||||||| ||||    
T  7218057 cttgtgaaaacgacttatgacacgttcacaagctgttttcaacttattttcataa 7218111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 7262507 - 7262549
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  7262507 aaaacagcttttgacatgttcataagctgttttcaccttattt 7262549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 24460394 - 24460440
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattttt 194  Q
    |||||| ||||||||||||||||||||| ||||| || |||||||||    
T  24460394 tgaaaatagcttatgacatgttcataagctgtttccagcttattttt 24460440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 31118132 - 31118082
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| |||||||| |||||||||||||||| || |||||||| |||||||    
T  31118132 aacttatgaaaacatcttatgacatgttcatcagttgttttcagcttattt 31118082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 31517719 - 31517777
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| | |||||| || |||||||||||||||| |||||||| |||||||| ||||    
T  31517719 agaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataa 31517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 37593671 - 37593721
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| ||| ||||||||||||||||||| |||||||| |||||||| ||||    
T  37593671 tgaacacaacttatgacatgttcataagctgttttcagcttattttcataa 37593721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 38247032 - 38247090
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| |||||||  ||||| ||| ||||||||| ||||||||||||| ||||||||    
T  38247032 agaacttatgaaaaccacttattacacgttcataagttgttttcaacttacttttataa 38247090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 4445791 - 4445746
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||| |||||||| ||||||||| ||| |||||||||||||||||    
T  4445791 tgaaagcagcttataacatgttcagaagctgttttcaacttatttt 4445746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 4482021 - 4481968
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||||    
T  4482021 agaacttatgaaaacaacttattacatgttcataagctgtttttagcttatttt 4481968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 4549747 - 4549714
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttca 184  Q
    ||||||||||||||||||||||||| ||||||||    
T  4549747 aaacagcttatgacatgttcataagctgttttca 4549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 5886989 - 5887026
Alignment:
Q  156 gcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  5886989 gcttatgacatgttcataagttgttttcagcttatttt 5887026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 27140558 - 27140517
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttattt 27140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 29723569 - 29723528
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||| |||||  ||||||||||||||||    
T  29723569 aaacagcttatgacatgtccataaactgttttcaacttattt 29723528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 39270412 - 39270457
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||| || ||||| |||||| |||||||||||||||||    
T  39270412 tgaaaacagcttttggcatgtccataagctgttttcaacttatttt 39270457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 45394207 - 45394154
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||  ||||||||||||||| ||||  ||||| ||||||||||||||||    
T  45394207 aagaacttaagaaaacagcttatgagatgtcgataagctgttttcaacttattt 45394154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 5276367 - 5276331
Alignment:
Q  157 cttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5276367 cttatgacatgttcataagttgttttcaagttatttt 5276331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 12477274 - 12477318
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| ||||||||||||||| |||||| |||||||| |||||||    
T  12477274 tgaaagcagcttatgacatgtccataagttgttttcagcttattt 12477318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 30257756 - 30257716
Alignment:
Q  158 ttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||| |||||||| ||||||| |||||    
T  30257756 ttatgacatgttcataagctgttttcagcttatttctataa 30257716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 34290317 - 34290269
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||| |||||||||||| |||||||| |||||||| |||||||| ||||    
T  34290317 aaaaaagcttatgacatattcataagttgttttcagcttattttcataa 34290269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 35669063 - 35669011
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| ||||| |||||||||| |||| |||||  ||||||||||||||||    
T  35669063 agaacttatgaaagcagcttatgatatgtccataaattgttttcaacttattt 35669011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 38882917 - 38882949
Alignment:
Q  166 tgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||||||||||||| ||||    
T  38882917 tgttcataaggtgttttcaacttattttcataa 38882949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 41059955 - 41059904
Alignment:
Q  47 agataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgat 98  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  41059955 agataggctatgaaaatagctaatagtttatgcaaaaaaaatataacttgat 41059904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 15406001 - 15406044
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  15406001 aaaacagcttatgacatgttcataagctgttttcaatttatttt 15406044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 42100403 - 42100344
Alignment:
Q  140 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||| |||||||| ||||    
T  42100403 agaacttgtgaaaatagcttatgacatagttcaaaaggtgttttcatcttattttcataa 42100344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 7674740 - 7674686
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| || ||||| ||||||||||||| |||||||||||||| ||||||||    
T  7674740 aagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttatttt 7674686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 10125697 - 10125755
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| || ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  10125697 agaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataa 10125755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 13604836 - 13604886
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  13604836 tgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataa 13604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 17258870 - 17258920
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||| ||||    
T  17258870 tgaaaatagcttatgacatgttcataagctgttttcagcttattttcataa 17258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 21768184 - 21768229
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||    
T  21768184 tgaaaacagcttatgacatgtccatacgctgttttcaacttatttt 21768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 499710 - 499762
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||||||||||||||||| | ||| |||||||| |||||||    
T  499710 agaacttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 499762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 18857376 - 18857435
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| || ||||||||||| |||||||||||||||| |||||| |||||| ||| ||||    
T  18857376 aagaatttatgaaaacagctaatgacatgttcataagctgtttttaacttaatttcataa 18857435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 39248190 - 39248143
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaact 187  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  39248190 agaacttataaaaacagcttatgacttgttcataagctgttttcaact 39248143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Original strand, 41957441 - 41957488
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  41957441 aaacagcttatgacatgtccataagttgttttcatcttattttcataa 41957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 1899235 - 1899193
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  1899235 aaaacagcttatgacatgtgcataagttgttttcagcttattt 1899193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 2568750 - 2568696
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| ||||||||||||||||||| |||||||| | |||| | ||||||||    
T  2568750 aagaacttatgaaaacagcttatgacatattcataagttatttttagcttatttt 2568696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 22020399 - 22020357
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  22020399 aaacagcttatgacatgtcaataagttgttttcaacttatttt 22020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 2880537 - 2880578
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| |||| |||||||||||||||||||| |||||||    
T  2880537 aaacagctaatgatatgttcataaggtgttttcagcttattt 2880578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 3977397 - 3977340
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 199  Q
    ||||| ||||||||||||||||||||||| | || ||| |||| |||||||| |||||    
T  3977397 aacttatgaaaacagcttatgacatgttccttagctgtcttcagcttattttcataat 3977340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 7985021 - 7984952
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatag-tttatgcaaaaacaa 87  Q
    |||||| ||||||||||||| |  || ||||||| ||||||||| |||| |||| |||||||||||||||    
T  7985021 ttttcagcttattttcataaattctccaagatagcttatgaaaaaagcttatagctttatgcaaaaacaa 7984952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 12425623 - 12425555
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaa 87  Q
    ||||||||||||||||||||||  || ||||||| || |||||| |||| |||| |||| | |||||||    
T  12425623 ttttcaacttattttcataagttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaa 12425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 14331448 - 14331400
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||| |||||| || ||||| |||||||| ||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataa 14331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 17368767 - 17368715
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||| ||||||||||||||||| |  ||||||| |||||||    
T  17368767 agaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttattt 17368715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25461334 - 25461402
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaa 87  Q
    |||||| ||||||||||||| |   | ||||||||||||||||| || | |||| ||||||||||||||    
T  25461334 ttttcagcttattttcataaatacgccaagataggttatgaaaacagtttatagcttatgcaaaaacaa 25461402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 37794685 - 37794729
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| ||||||||||||||||||| |||||| | |||||||    
T  37794685 tgaaaacaacttatgacatgttcataagctgttttgagcttattt 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 42646983 - 42646947
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataag 175  Q
    |||||||| |||||| |||||||||||||||||||||    
T  42646983 aagaacttatgaaaatagcttatgacatgttcataag 42646947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 5902527 - 5902585
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttata 197  Q
    |||||||| |||||||||||||||||||||||||||  |||||||| ||| ||||||||    
T  5902527 aagaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttttata 5902585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 1647328 - 1647275
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| |||||||    
T  1647328 aagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttattt 1647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 40682373 - 40682432
Alignment:
Q  140 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||| ||||    
T  40682373 agaacttgttaaaatagcttatgacattgttcataagttgttttcaacttattttcataa 40682432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 44438819 - 44438870
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  44438819 gaacatgtgaaaacagcttatgacatgttcataacctgttttcagcttattt 44438870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 787423 - 787373
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 190  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||| |||||    
T  787423 agaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 35538674 - 35538728
Alignment:
Q  144 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||| |||||    
T  35538674 cttgtgaaaatagcttatgacatgttcataagctgttttccgcttatttatataa 35538728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 35557108 - 35557162
Alignment:
Q  144 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||| |||||    
T  35557108 cttgtgaaaatagcttatgacatgttcataagctgttttctgcttatttatataa 35557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 28677638 - 28677690
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||  |||||||    
T  28677638 agaacttatgaaaacagcttatgacattttcataagttgttttcggcttattt 28677690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 40158808 - 40158760
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 189  Q
    |||||| |||||||||||||||||||||| ||||| |||||||| ||||    
T  40158808 gaacttatgaaaacagcttatgacatgtttataagttgttttcagctta 40158760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 43530090 - 43530142
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||    
T  43530090 agaacttatgaaaacagattatgacatgttcacaagctattttcaacttattt 43530142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 1801759 - 1801724
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataag 175  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1801759 agaacttatgaaaacagcttatgacatgttcataag 1801724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 44606088 - 44606147
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||||| |||||||||||| |||||| |||||||| || ||||| ||||    
T  44606088 aagaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 4350781 - 4350747
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataa 174  Q
    ||||||| |||||||||||||||||||||||||||    
T  4350781 agaacttatgaaaacagcttatgacatgttcataa 4350747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 7035525 - 7035604
Alignment:
Q  116 gttttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||     |||||||| || |||||||||||||||  |||||||||||||||||  |||||||| ||||    
T  7035525 gttttgtgagactgttttg----aagaacttatggaaacagcttatgacacagttcataaggtgttttccgcttattttcataa 7035604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 12313160 - 12313210
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||| |||||||||||| || ||||| |||||||| ||||    
T  12313160 tgaaaacagcttatgccatgttcataagttgatttcaccttattttcataa 12313210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 29316764 - 29316806
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||||||||||| | |||||| |||||||    
T  29316764 aaaacagcttatgacatgttcataagttcttttcagcttattt 29316806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 35378511 - 35378569
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||| ||||||||||| ||||| |||||||||| | |||||| |||||||| ||||    
T  35378511 agaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataa 35378569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 35379003 - 35379053
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||| ||||| |||||||||| |||||||| |||||||| ||||    
T  35379003 tgaaaacagctgatgacttgttcataagttgttttcagcttattttcataa 35379053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 43827942 - 43827984
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||||||||||||||||||||| || ||| |||||||||    
T  43827942 aaaacagcttatgacatgttcataagttgcttttaacttattt 43827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 680586 - 680541
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||||| ||||  |||||||| ||||||||    
T  680586 tgaaaacagcttatgacatgtttataaactgttttcagcttatttt 680541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 1056113 - 1056166
Alignment:
Q  145 ttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||| |||||||||||||||| || |||||||| ||| |||| ||||    
T  1056113 ttgtgaaaacaacttatgacatgttcattagttgttttcagcttgttttcataa 1056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 7928275 - 7928336
Alignment:
Q  139 aagaacttgtgaaaacagcttat-gaca-tgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| ||||    
T  7928275 aagaacttttgaaaacagcttatggacattgttcataagttgttttcagcttattttcataa 7928336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 33256823 - 33256778
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||||||||||||||||||||||  |||| ||| ||||||||    
T  33256823 tgaaaacagcttatgacatgttcataaactgttctcagcttatttt 33256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 33941998 - 33941949
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatt 191  Q
    ||||| |||||||| ||||||||| ||||||||| || ||||||||||||    
T  33941998 aacttatgaaaacaacttatgacaagttcataagctgctttcaacttatt 33941949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 34652026 - 34652067
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttattt 34652067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 41809223 - 41809276
Alignment:
Q  139 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| |||||| ||||| ||||||||||||||||||| |||||| | |||||||    
T  41809223 aagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttattt 41809276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 41812070 - 41812123
Alignment:
Q  140 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttattt 192  Q
    ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||    
T  41812070 agaacttttgaaaacagcttatgacatttttcataagcttttttcaacttattt 41812123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 1939323 - 1939363
Alignment:
Q  152 aacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||| |||||||||||| |||||| ||||||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttattt 1939363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 2091014 - 2091066
Alignment:
Q  141 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||| |||| ||||||||||| ||| ||||||| |||||||| ||||||||    
T  2091014 gaacttatgaatacagcttatgatatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 10285943 - 10285899
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||| | |||||||||||| |||||| ||||||||||||||||    
T  10285943 tgaaaataacttatgacatgtccataagctgttttcaacttattt 10285899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 10567143 - 10567095
Alignment:
Q  145 ttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||| ||||||||||||||||| ||||||| |||||||| || |||||    
T  10567143 ttgtggaaacagcttatgacatgatcataagttgttttcagctaatttt 10567095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 12464491 - 12464559
Alignment:
Q  19 ttttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaa 87  Q
    |||||| |||||||||| ||||  || ||||||| |||||||||||||| ||||  ||| |||||||||    
T  12464491 ttttcagcttattttcacaagttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaa 12464559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 38809417 - 38809365
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| | ||| |||||||||||||||| ||||  ||||||||||||||||    
T  38809417 agaacttattaaaccagcttatgacatgttaataatctgttttcaacttattt 38809365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 43717117 - 43717173
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    ||||| ||||||||||||| ||||| |||||| | |||||||| |||||||| ||||    
T  43717117 aacttatgaaaacagcttaggacattttcataggttgttttcagcttattttcataa 43717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 98628 - 98671
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  98628 gaaaatagcttatgacatgttcataagctgttttcaacttattt 98671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 28300286 - 28300336
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||| ||||    
T  28300286 tgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataa 28300336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 23819171 - 23819122
Alignment:
Q  149 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  23819171 gaaaacagcttatgacatgtccataagttgttttcatcttatttctataa 23819122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 37863933 - 37863982
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 189  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||| ||||    
T  37863933 agaacttatgaaaacagcttatgacacgttcataagttgttttcacctta 37863982  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 38515920 - 38515866
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 198  Q
    |||||| ||||||||||||||||||  ||||||| |||||||| |||||||||||||    
T  38515920 aacttgggaaaacagcttatgacat--tcataagctgttttcagcttatttttataa 38515866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1137803 - 1137759
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||    
T  1137803 agaacttatgaaaacatcttatgacatgttcataagttgttttca 1137759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 1966024 - 1965980
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  1966024 tgaaaacaacttatgacatgttcataagctgtttttaacttattt 1965980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 17223023 - 17223067
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||| || |||||||||||||||||| ||||||||||||||||    
T  17223023 tgaaaatagtttatgacatgttcataagctgttttcaacttattt 17223067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 39178245 - 39178297
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||| ||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  39178245 agaacttatgaaaaccgcttatgacacgttaataagatgttttcaacttattt 39178297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 49939928 - 49939988
Alignment:
Q  139 aagaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 198  Q
    |||||||| |||||| ||||||||||| |||||||||| |||||||| |||||| ||||||    
T  49939928 aagaacttatgaaaagagcttatgacattgttcataagctgttttcagcttattattataa 49939988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 35571650 - 35571725
Alignment:
Q  20 tttcaacttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaacaacataactt 95  Q
    |||||||||||||||| ||||  || ||||||| ||||||||| |||| |||| |||| | ||||||| |||||||    
T  35571650 tttcaacttattttcacaagttctctaagatagcttatgaaaacagcttatagcttatacgaaaacaatataactt 35571725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 56249605 - 56249562
Alignment:
Q  150 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||| |||||||| | |||||||||||||||    
T  56249605 aaaacagcttatgacattttcataagcttttttcaacttatttt 56249562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 7368041 - 7368087
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttattttt 194  Q
    |||||||||||||||||||||| ||||| || ||||||| |||||||    
T  7368041 tgaaaacagcttatgacatgtttataagctgctttcaacatattttt 7368087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 20936210 - 20936260
Alignment:
Q  142 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||| |||||||| ||||||| ||||||||||| |||||||| |||||||    
T  20936210 aacttatgaaaacaacttatgatatgttcataagctgttttcaccttattt 20936260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 23459719 - 23459669
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 190  Q
    ||||||| |||||| ||||||||||||||| ||||| | ||||||||||||    
T  23459719 agaacttatgaaaaaagcttatgacatgttaataagttattttcaacttat 23459669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 39886632 - 39886682
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 190  Q
    ||||||||||||| ||  |||||||||||||||||  ||||||||||||||    
T  39886632 agaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 39886682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 2996656 - 2996611
Alignment:
Q  148 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||    
T  2996656 tgaaaacaacttatgacatgtccataagcttttttcaacttatttt 2996611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 25571351 - 25571298
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||| || |||||| |||||| ||||||||||| |||||||| ||||||||    
T  25571351 agaacttatggaaacagtttatgatatgttcataagctgttttcagcttatttt 25571298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 29263450 - 29263409
Alignment:
Q  151 aaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttattt 29263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 16200006 - 16200066
Alignment:
Q  26 cttattttcataagtcatcaaagataggttatgaaaatagctaatagtttatgcaaaaaca 86  Q
    |||||||||||||||| || ||||||| ||||||||| |||| ||||  ||| ||||||||    
T  16200006 cttattttcataagtcctccaagatagcttatgaaaacagcttatagcatatacaaaaaca 16200066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 19250620 - 19250580
Alignment:
Q  157 cttatgacatgttcataaggtgttttcaacttatttttata 197  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  19250620 cttatgacatgtccataagctgatttcaacttatttttata 19250580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 19305017 - 19304973
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 184  Q
    |||| ||||| |||||||||||||||||| |||||| ||||||||    
T  19305017 agaatttgtggaaacagcttatgacatgtccataagttgttttca 19304973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 29388875 - 29388823
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 192  Q
    |||||||| |||||||||||| |||||||||||||  |||||  |||||||||    
T  29388875 agaacttgcgaaaacagcttaagacatgttcataatctgtttcaaacttattt 29388823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 42641616 - 42641660
Alignment:
Q  138 caagaacttgtgaaaacagcttatgacatgttcataaggtgtttt 182  Q
    ||||||||| |||||||| ||||||||||||||| ||| ||||||    
T  42641616 caagaacttatgaaaacaccttatgacatgttcacaagctgtttt 42641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 55414405 - 55414457
Alignment:
Q  147 gtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 198  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||||| ||||    
T  55414405 gtgaaaacagcttatgacatttttcataagcttttttcaacttattttcataa 55414457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 9616 - 9669
Alignment:
Q  140 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||||    
T  9616 agaacttatgaaaacaacttattacatgttcataagctgtttttagcttatttt 9669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 2844 - 2804
Alignment:
Q  153 acagcttatgacatgttcataaggtgttttcaacttatttt 193  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  2844 acagcttatgacatgttcacaagctattttcaacttatttt 2804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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