View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9414_low_2 (Length: 566)

Name: NF9414_low_2
Description: NF9414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9414_low_2
NF9414_low_2
[»] scaffold0043 (3 HSPs)
scaffold0043 (224-383)||(53847-54006)
scaffold0043 (181-221)||(54033-54073)
scaffold0043 (382-450)||(53744-53812)
[»] chr3 (33 HSPs)
chr3 (183-450)||(27390713-27390991)
chr3 (194-383)||(27377437-27377635)
chr3 (183-385)||(1366855-1367055)
chr3 (239-357)||(18025246-18025366)
chr3 (48-131)||(27377169-27377252)
chr3 (283-358)||(27459606-27459681)
chr3 (288-358)||(28036704-28036774)
chr3 (288-385)||(28003461-28003558)
chr3 (288-356)||(27919615-27919683)
chr3 (288-356)||(27979743-27979811)
chr3 (286-354)||(19476134-19476202)
chr3 (285-356)||(26179541-26179612)
chr3 (285-356)||(26235972-26236043)
chr3 (302-385)||(28005124-28005207)
chr3 (239-356)||(26202074-26202191)
chr3 (287-357)||(28084320-28084390)
chr3 (283-356)||(26128187-26128260)
chr3 (283-356)||(26178237-26178310)
chr3 (211-358)||(11420253-11420402)
chr3 (283-345)||(26129502-26129564)
chr3 (302-354)||(8539820-8539872)
chr3 (302-354)||(26628943-26628995)
chr3 (288-339)||(28151203-28151254)
chr3 (382-448)||(18025161-18025227)
chr3 (283-345)||(26630609-26630671)
chr3 (287-357)||(27389376-27389446)
chr3 (300-357)||(19483607-19483664)
chr3 (382-438)||(1366772-1366828)
chr3 (81-136)||(27391553-27391608)
chr3 (39-129)||(26111870-26111960)
chr3 (303-345)||(28135287-28135329)
chr3 (299-347)||(19477127-19477175)
chr3 (292-356)||(26140133-26140197)
[»] chr2 (4 HSPs)
chr2 (222-370)||(22392394-22392551)
chr2 (29-131)||(22392082-22392184)
chr2 (194-279)||(22398676-22398761)
chr2 (382-450)||(22392599-22392667)
[»] scaffold1142 (1 HSPs)
scaffold1142 (283-358)||(1327-1402)


Alignment Details
Target: scaffold0043 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 224 - 383
Target Start/End: Complemental strand, 54006 - 53847
Alignment:
Q  224 atgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactcacaactacttaaaaatattctacaactaatttacattttcatgc 323  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  54006 atgtcattgtgaatttaaagctaaaaatcatgtattaaataaattaaattttactcacaactacttaaaaatattgtgcaactaatttacattttcatgc 53907  T
Q  324 tatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtccacca 383  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  53906 tatgctatcagttggagggttcaacgccagaaaaacctgtagcggaatctttgtctacca 53847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 54073 - 54033
Alignment:
Q  181 tccatcaaaccttctcatggaaatgacaatgtaatatagaa 221  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  54073 tccatcaaaccttctcatggaaatgacaatgtaatacagaa 54033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 450
Target Start/End: Complemental strand, 53812 - 53744
Alignment:
Q  382 cattgatactaaacaaaaggtatttcctctattttgcctatattctttctgaaactttttcaatgcagg 450  Q
    |||||||  ||||||||||| |||| |||||||||||  |||||| |||| | |||||| |||||||||    
T  53812 cattgatcataaacaaaaggcattttctctattttgctcatattcattcttatacttttacaatgcagg 53744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 183 - 450
Target Start/End: Complemental strand, 27390991 - 27390713
Alignment:
Q  183 catcaaaccttctcatggaaatgacaatgtaatatagaaccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactc--a 280  Q
    ||||||||||| |||||||||| | |||||||||||| | ||   ||||||| || |||||||| | || || ||||||||||| |||||||||||   |    
T  27390991 catcaaaccttttcatggaaataataatgtaatatagcagcaccacattgtgcatataaagctacagattaaatattaaagaaaataaattttactggaa 27390892  T
Q  281 caactacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtcca 380  Q
    ||||| ||||| ||||| || ||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||| || |||||| |||||||||||||    
T  27390891 caactgcttaataatatgctgcaactaatttaaattttcatgttatgcaattagttggagggttcaccgtcagaaagacttgtagcagaatctttgtcca 27390792  T
Q  381 c---------cattgatactaaacaaaaggtatttcctctattttgcctatattctttctgaaactttttcaatgcagg 450  Q
    |         |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  27390791 ccatacaagtcattgatagtaaacaaaaggcatttcctctattttgcctgtattttttctgaaactttttcaatgcagg 27390713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 383
Target Start/End: Original strand, 27377437 - 27377635
Alignment:
Q  194 ctcatggaaatgacaatgtaatatagaaccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactca---------caac 284  Q
    ||||||||||| | | |||||| ||| ||||  |||||||| || | |||||||||||||| ||||||||||| ||||||||||||          ||||    
T  27377437 ctcatggaaataaaattgtaatttagcaccacctcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactctaacaggtagcaac 27377536  T
Q  285 tacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtccacca 383  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||   ||||||||||    
T  27377537 tacttaaaaatattctgcaactaatttatattttcatgctatgcaattagttggaggattcaacgtcagaaaaacctgtagcggaactgttgtccacca 27377635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 183 - 385
Target Start/End: Complemental strand, 1367055 - 1366855
Alignment:
Q  183 catcaaaccttctcatggaaatgacaatgtaatatagaaccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactcaca 282  Q
    |||| |||||||| ||||||||||||||||||||||| | ||   | || || || |||||  | |||| || ||||| ||||| ||||| |||||||||    
T  1367055 catcgaaccttctaatggaaatgacaatgtaatatagcaacaccacgttatgcatataaagaaacaaattaaatattatagaaaataaatattactcaca 1366956  T
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtccacc 382  Q
     | ||| ||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || |||| ||||||||||   |||||||||||||    
T  1366955 -caactaaaacatattctgcaactaatttacattttcatgctatg-aattagttggagggttcaatgttagaacaacctgtagccacatctttgtccacc 1366858  T
Q  383 att 385  Q
    |||    
T  1366857 att 1366855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 239 - 357
Target Start/End: Complemental strand, 18025366 - 18025246
Alignment:
Q  239 taaagctaaaaatcaattattaaagaaattaaattttactc--acaactacttaaaaatattctacaactaatttacattttcatgctatgcaatcagtt 336  Q
    ||||||||||||| || |||| |||||| |  |||||| ||  |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||    
T  18025366 taaagctaaaaatgaaatatttaagaaaatttattttattctaacaactacttaaaactatgctgcaactaatttacattttcatgctatgcaatcagtt 18025267  T
Q  337 ggagggttcaacgtcagaaaa 357  Q
    || | ||||| | ||||||||    
T  18025266 ggcgagttcaccatcagaaaa 18025246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 27377169 - 27377252
Alignment:
Q  48 caagttcaaaaaccactgaagatattgcggctgggattgaagatcaaggagcatcagggcacatgttgacttcttcacaggtca 131  Q
    |||||||| ||||||||||||||||||| ||||  ||||||| | ||| ||||||||| |||||||||||||||||||||||||    
T  27377169 caagttcagaaaccactgaagatattgcagctgaaattgaagttgaagtagcatcaggacacatgttgacttcttcacaggtca 27377252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 27459681 - 27459606
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaa 358  Q
    ||||||||||||||   | ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  27459681 actacttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttggagggttcaacgtcagaaaaa 27459606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 28036704 - 28036774
Alignment:
Q  288 ttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaa 358  Q
    ||||||||||  | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  28036704 ttaaaaatatgatgcaactaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaa 28036774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 28003461 - 28003558
Alignment:
Q  288 ttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtccaccatt 385  Q
    ||||||||||  | ||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||  ||||||   | ||||||||||||||    
T  28003461 ttaaaaatatgttgcaagtaatttacattttcatgttatgcaatcagttggagggttcaacatcagaaaaaaatgtagcatcaactttgtccaccatt 28003558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 27919615 - 27919683
Alignment:
Q  288 ttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    ||||||||||  | |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  27919615 ttaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27919683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 288 - 356
Target Start/End: Original strand, 27979743 - 27979811
Alignment:
Q  288 ttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    ||||||||||  | |||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  27979743 ttaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttggagggttcaacgtcagaaa 27979811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 19476134 - 19476202
Alignment:
Q  286 acttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcaga 354  Q
    ||||||||||||  |||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||    
T  19476134 acttaaaaatatgttacaactaatttacattttcttgctatggaattagttggagggttctacgtcaga 19476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 26179612 - 26179541
Alignment:
Q  285 tacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    ||||||||||||| || ||||||| |||||||||||||| ||||||| ||||||||||||| || |||||||    
T  26179612 tacttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttggagggttctacatcagaaa 26179541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 26236043 - 26235972
Alignment:
Q  285 tacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    |||||| |||||| || |||||||||||||||||||||| ||||||| ||||||||||||| || |||||||    
T  26236043 tacttataaatatgctgcaactaatttacattttcatgcaatgcaattagttggagggttctacatcagaaa 26235972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 28005124 - 28005207
Alignment:
Q  302 caactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaatctttgtccaccatt 385  Q
    |||||||||||||||||||||||||||||| |||||||||| || || |||||||||   ||||  ||| ||||||||||||||    
T  28005124 caactaatttacattttcatgctatgcaattagttggagggctctacatcagaaaaattagtaggtgaaactttgtccaccatt 28005207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 26202191 - 26202074
Alignment:
Q  239 taaagctaaaaatcaattattaaagaaattaaattttactcaca-actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttg 337  Q
    ||||||||||||| ||| |||||||||| |||||||   | ||  ||||||| |||||||  | |||||||||||||||||||||||||||| |||| ||    
T  26202191 taaagctaaaaataaat-attaaagaaaataaatttagttaacctactacttgaaaatataatgcaactaatttacattttcatgctatgcattcagctg 26202093  T
Q  338 gagggttcaacgtcagaaa 356  Q
    |||||||| || |||||||    
T  26202092 gagggttctacatcagaaa 26202074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 28084320 - 28084390
Alignment:
Q  287 cttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaa 357  Q
    |||| |||||| |||||| | ||||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  28084320 cttacaaatatactacaattcatttacattttcatgctatacaattagttggaaggttcaacgtcagaaaa 28084390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 26128260 - 26128187
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    ||||||| |||||||  | |||||||||||||||||||||||||||||| |||| |||||||| || |||||||    
T  26128260 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaa 26128187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 26178310 - 26178237
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    ||||||| |||||||  | |||||||||||||||||||||||||||||| |||| |||||||| || |||||||    
T  26178310 actacttgaaaatataatgcaactaatttacattttcatgctatgcaattagttagagggttctacatcagaaa 26178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 358
Target Start/End: Original strand, 11420253 - 11420402
Alignment:
Q  211 gtaatatagaaccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactc--acaactacttaaaaatattctacaactaa 308  Q
    ||||||||| ||||| |||||||| || |||| |||||||  |   ||||||  || |||||||||| |  || |||||||||||||||  | |||||||    
T  11420253 gtaatatagtaccatctcattgtgcatataaaactaaaaaagatgcattaaaagaaataaattttaccccaactactacttaaaaatatgttgcaactaa 11420352  T
Q  309 tttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaa 358  Q
    |||||||||||||  | |  |||||||| | |||||||||||||||||||    
T  11420353 tttacattttcatcatgttaaatcagttcgtgggttcaacgtcagaaaaa 11420402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 26129564 - 26129502
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttc 345  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||| | || ||||||||||    
T  26129564 actacttaaaaatatgctgcaactaaattacattttcatgctatgcatttagctggagggttc 26129502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 8539872 - 8539820
Alignment:
Q  302 caactaatttacattttcatgctatgcaatcagttggagggttcaacgtcaga 354  Q
    ||||||||||||||||||||  |||||||||||||||||||||| || |||||    
T  8539872 caactaatttacattttcattttatgcaatcagttggagggttctacatcaga 8539820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 26628943 - 26628995
Alignment:
Q  302 caactaatttacattttcatgctatgcaatcagttggagggttcaacgtcaga 354  Q
    ||||||||||| ||||||||||  || ||||||||||||||||||||||||||    
T  26628943 caactaatttatattttcatgccgtggaatcagttggagggttcaacgtcaga 26628995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 28151203 - 28151254
Alignment:
Q  288 ttaaaaatattctacaactaatttacattttcatgctatgcaatcagttgga 339  Q
    ||||||||||  | ||||||||||||||||||||| ||||||||||||||||    
T  28151203 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 28151254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 448
Target Start/End: Complemental strand, 18025227 - 18025161
Alignment:
Q  382 cattgatactaaacaaaaggtatttcctctattttgcctatattctttctgaaactttttcaatgca 448  Q
    |||||||  ||||||||||| ||||||||||||||||   |||||| |||||||||||| |||||||    
T  18025227 cattgatcataaacaaaaggcatttcctctattttgctcgtattctctctgaaacttttccaatgca 18025161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 26630609 - 26630671
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttc 345  Q
    |||||||||||||||  | |||||||||||||||| |||| | |||||| |||||||||||||    
T  26630609 actacttaaaaatatcatgcaactaatttacatttccatggtttgcaattagttggagggttc 26630671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 27389446 - 27389376
Alignment:
Q  287 cttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaa 357  Q
    |||| |||||| |||||||| |||||||||||||||| ||||| | || |||| ||||||||||| |||||    
T  27389446 cttacaaatatactacaacttatttacattttcatgccatgcatttagctggaaggttcaacgtcggaaaa 27389376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 19483664 - 19483607
Alignment:
Q  300 tacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaa 357  Q
    ||||||| |||||||||||||||  ||||||| ||||||| |||||||||| ||||||    
T  19483664 tacaacttatttacattttcatgacatgcaattagttggaaggttcaacgttagaaaa 19483607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 1366828 - 1366772
Alignment:
Q  382 cattgatactaaacaaaaggtatttcctctattttgcctatattctttctgaaactt 438  Q
    |||||||  ||||||||||||||||||||| |||||| | ||||||||||| |||||    
T  1366828 cattgatcataaacaaaaggtatttcctcttttttgcttgtattctttctggaactt 1366772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 27391608 - 27391553
Alignment:
Q  81 ggattgaagatcaaggagcatcagggcacatgttgacttcttcacaggtcagtcca 136  Q
    ||||||||| ||| | ||||||||| |||||||| |||||||||||||||| ||||    
T  27391608 ggattgaagttcatgcagcatcaggacacatgttcacttcttcacaggtcaatcca 27391553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 26111960 - 26111870
Alignment:
Q  39 atgaaagtccaagttcaaaaaccactgaagatattgcggctgggattgaagatcaaggagcatcagggcacatgttgacttcttcacaggt 129  Q
    |||||| ||||||| || |||||||  ||||| |||| ||||||| ||||||||||| ||||||||  |||| ||| |||| | |||||||    
T  26111960 atgaaaatccaagtgcagaaaccacaaaagattttgctgctgggagtgaagatcaagaagcatcagaacacaagttaacttgtccacaggt 26111870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 28135287 - 28135329
Alignment:
Q  303 aactaatttacattttcatgctatgcaatcagttggagggttc 345  Q
    |||||||||||||||| ||| |||||||| |||||||||||||    
T  28135287 aactaatttacatttttatgatatgcaattagttggagggttc 28135329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 19477127 - 19477175
Alignment:
Q  299 ctacaactaatttacattttcatgctatgcaatcagttggagggttcaa 347  Q
    ||||||| ||||||||||| ||| ||||||||| ||||||||| |||||    
T  19477127 ctacaaccaatttacatttgcattctatgcaattagttggaggtttcaa 19477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 26140197 - 26140133
Alignment:
Q  292 aaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaa 356  Q
    |||||| || ||||||| |||||||||||||||||||| | || |||| ||||| || |||||||    
T  26140197 aaatatgctgcaactaaattacattttcatgctatgcatttagctggaaggttctacatcagaaa 26140133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 22392394 - 22392551
Alignment:
Q  222 ccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactc---------acaactacttaaaaatattctacaactaattta 312  Q
    |||| |||||||| || | |||||||||||||| ||||||||||| ||||||||||||         ||||||||||||||||||||| |||||||||||    
T  22392394 ccatctcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactctaacaagtaacaactacttaaaaatattctgcaactaattta 22392493  T
Q  313 cattttcatgctatgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaa 370  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22392494 cattttcatgctacgcaatcagttggagggttcaacgtcagaaaaacctgtagcggaa 22392551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 22392082 - 22392184
Alignment:
Q  29 gatatctgtaatgaaagtccaagttcaaaaaccactgaagatattgcggctgggattgaagatcaaggagcatcagggcacatgttgacttcttcacagg 128  Q
    |||| ||||| ||||| | |||||||| |||||||||||||||||||  |||  ||||||| | ||| ||||||||| ||||||| ||||||||||||||    
T  22392082 gatacctgtagtgaaaattcaagttcagaaaccactgaagatattgcatctgaaattgaagttgaagtagcatcaggacacatgtcgacttcttcacagg 22392181  T
Q  129 tca 131  Q
    |||    
T  22392182 tca 22392184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 22398676 - 22398761
Alignment:
Q  194 ctcatggaaatgacaatgtaatatagaaccatgtcattgtgaatttaaagctaaaaatcaattattaaagaaattaaattttactc 279  Q
    ||||||||||| | | |||||| ||| ||||  |||||||| || | |||||||||||||| ||||||||||| ||||||||||||    
T  22398676 ctcatggaaataaaattgtaatttagcaccacctcattgtgcatattaagctaaaaatcaagtattaaagaaaataaattttactc 22398761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 450
Target Start/End: Original strand, 22392599 - 22392667
Alignment:
Q  382 cattgatactaaacaaaaggtatttcctctattttgcctatattctttctgaaactttttcaatgcagg 450  Q
    |||||||  ||||||||||| |||||||||||||| | | ||||| |||||| |||||| |||||||||    
T  22392599 cattgatcataaacaaaaggcatttcctctatttttcttgtattcattctgacacttttccaatgcagg 22392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 1327 - 1402
Alignment:
Q  283 actacttaaaaatattctacaactaatttacattttcatgctatgcaatcagttggagggttcaacgtcagaaaaa 358  Q
    ||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||| ||| | |||||||||    
T  1327 actacttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttggagggctcagcatcagaaaaa 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University