View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9414_low_6 (Length: 242)
Name: NF9414_low_6
Description: NF9414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9414_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 12571251 - 12571103
Alignment:
| Q |
80 |
tccgatgttcatctcagatgaaagtaaagtctgacaaataattgttttcgataggattcgaactcgacacctatgaatgaatgaatattaaagcaaatag |
179 |
Q |
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| T |
12571251 |
tccgatgttcatctcagatgaaaataaagtcggacaaataattgttttcgataggattcgaactcgacacctatgaatgaatcaatattaaagcaaatag |
12571152 |
T |
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| Q |
180 |
gaattgaaatgaagaaaaggtttgaaaattaccagagaaatgaaactga |
228 |
Q |
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| T |
12571151 |
gaattgaaatgaagaaaaggtttgaaaattaccagagaaatgaaactga |
12571103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 12571363 - 12571312
Alignment:
| Q |
7 |
tcaattacacaatccaccatcaacaagaaaacctaaaaaatagtatcatatt |
58 |
Q |
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| T |
12571363 |
tcaattacacaatccaccatcaacaagaaaacctaaaaaatagtatcatatt |
12571312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 20011029 - 20011093
Alignment:
| Q |
65 |
aaaaggtcctagtaatccgatgttcatctcagatgaaagtaaagtctgacaaataattgttttcg |
129 |
Q |
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| T |
20011029 |
aaaaggtcctagtaatccggtgttcatctctgatgaaagtaaaatcttactaagagttgttttcg |
20011093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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