View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9415_high_1 (Length: 901)

Name: NF9415_high_1
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9415_high_1
NF9415_high_1
[»] chr6 (12 HSPs)
chr6 (727-820)||(1831209-1831304)
chr6 (732-833)||(15603721-15603824)
chr6 (733-822)||(11680417-11680508)
chr6 (727-793)||(1131873-1131939)
chr6 (725-786)||(13758522-13758583)
chr6 (725-768)||(15060267-15060310)
chr6 (727-793)||(22012054-22012121)
chr6 (733-768)||(26817743-26817778)
chr6 (727-769)||(1423078-1423120)
chr6 (727-793)||(18675452-18675518)
chr6 (727-793)||(34043643-34043710)
chr6 (727-793)||(20990538-20990604)
[»] chr2 (10 HSPs)
chr2 (727-844)||(31548801-31548920)
chr2 (727-822)||(25621891-25621987)
chr2 (725-768)||(6883759-6883802)
chr2 (727-768)||(7444046-7444087)
chr2 (538-646)||(31548615-31548723)
chr2 (727-793)||(44322160-44322227)
chr2 (727-793)||(6221485-6221552)
chr2 (727-793)||(33015131-33015198)
chr2 (727-793)||(44313981-44314048)
chr2 (727-793)||(2554155-2554221)
[»] chr4 (9 HSPs)
chr4 (725-822)||(10142585-10142684)
chr4 (729-818)||(13957694-13957785)
chr4 (725-793)||(52460640-52460708)
chr4 (725-782)||(25201776-25201833)
chr4 (725-768)||(3665085-3665128)
chr4 (729-765)||(24611029-24611065)
chr4 (727-793)||(10094960-10095027)
chr4 (731-822)||(42511284-42511377)
chr4 (727-768)||(31915592-31915633)
[»] chr8 (7 HSPs)
chr8 (726-844)||(23231934-23232054)
chr8 (725-818)||(9381777-9381872)
chr8 (725-822)||(11648049-11648148)
chr8 (727-793)||(1981695-1981762)
chr8 (727-793)||(16729829-16729895)
chr8 (725-822)||(602067-602166)
chr8 (727-768)||(7263571-7263612)
[»] chr7 (10 HSPs)
chr7 (725-822)||(8113441-8113540)
chr7 (735-822)||(43178549-43178638)
chr7 (727-768)||(20394724-20394765)
chr7 (729-822)||(24441602-24441697)
chr7 (727-793)||(8389237-8389304)
chr7 (726-768)||(9420803-9420845)
chr7 (731-793)||(21863958-21864020)
chr7 (725-768)||(3123703-3123746)
chr7 (727-793)||(13754214-13754280)
chr7 (727-768)||(35477916-35477957)
[»] chr3 (7 HSPs)
chr3 (725-822)||(44879887-44879986)
chr3 (725-821)||(47185419-47185517)
chr3 (725-793)||(33100367-33100435)
chr3 (727-785)||(15760966-15761025)
chr3 (727-793)||(19157192-19157259)
chr3 (727-793)||(27941454-27941521)
chr3 (727-793)||(52448242-52448308)
[»] chr1 (11 HSPs)
chr1 (725-822)||(12028198-12028297)
chr1 (725-793)||(9023523-9023591)
chr1 (727-768)||(44310772-44310813)
chr1 (725-769)||(42055752-42055796)
chr1 (727-822)||(48646364-48646465)
chr1 (727-760)||(23664046-23664079)
chr1 (727-767)||(5208382-5208422)
chr1 (727-793)||(21906478-21906545)
chr1 (727-793)||(34307384-34307451)
chr1 (727-793)||(48596290-48596357)
chr1 (690-727)||(42055752-42055789)
[»] chr5 (14 HSPs)
chr5 (725-793)||(13820548-13820616)
chr5 (725-820)||(43170958-43171055)
chr5 (729-768)||(29789921-29789960)
chr5 (725-768)||(37135209-37135252)
chr5 (727-793)||(5578547-5578613)
chr5 (729-844)||(8805959-8806076)
chr5 (727-769)||(26402397-26402439)
chr5 (727-768)||(5120439-5120480)
chr5 (727-768)||(39537338-39537379)
chr5 (729-793)||(29150696-29150760)
chr5 (725-768)||(16686673-16686716)
chr5 (727-793)||(23962949-23963016)
chr5 (727-793)||(13490489-13490555)
chr5 (690-727)||(13820548-13820585)
[»] scaffold1266 (1 HSPs)
scaffold1266 (725-793)||(1672-1740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (725-822)||(1036-1135)
[»] scaffold0263 (1 HSPs)
scaffold0263 (725-793)||(18278-18346)
[»] scaffold0116 (1 HSPs)
scaffold0116 (725-756)||(41108-41139)


Alignment Details
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 727 - 820
Target Start/End: Complemental strand, 1831304 - 1831209
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 820  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||| |||||   || |||||||||||||||||||||||    
T  1831304 acaccaaaacaaaataaaataccgcagaagtagagaacaataacatctgcgaagtagactgaaattttagcatctaagaataataacaccaaaaaa 1831209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 732 - 833
Target Start/End: Original strand, 15603721 - 15603824
Alignment:
Q  732 aaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttacatt 829  Q
    |||||||||||||||||| ||||||||||||||||||  | |||  ||||| | || |||||   |||||||||||||||||||||||||| ||||||||    
T  15603721 aaaacaaaataaaatatcatagaagtagagaacaatagcacctgcaaagtaaattgaaattttagcacctaagaataataacaccaaaaaactttacatt 15603820  T
Q  830 acta 833  Q
    ||||    
T  15603821 acta 15603824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 733 - 822
Target Start/End: Original strand, 11680417 - 11680508
Alignment:
Q  733 aaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgca--atttacacctaagaataataacaccaaaaaagt 822  Q
    |||||||||||||||||||||||||| |||||||||  |  || |||||| |||| |  ||| |||||||||||||||||||||||||||||    
T  11680417 aaacaaaataaaatatcgtagaagtatagaacaatagcacatgcgaagtatactgaaatattaacacctaagaataataacaccaaaaaagt 11680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 1131939 - 1131873
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| || |||||    
T  1131939 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagtacatgtgaagtagattgaaattt 1131873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 725 - 786
Target Start/End: Original strand, 13758522 - 13758583
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagact 786  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  |  |||||||||||||    
T  13758522 agacaccaaaacagaataaaataccgtagaagtagagaacaatagcacatgtgaagtagact 13758583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 768
Target Start/End: Complemental strand, 15060310 - 15060267
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15060310 agacaccaaaacaaaataaaataccatagaagtagagaacaata 15060267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 22012054 - 22012121
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  22012054 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 22012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 733 - 768
Target Start/End: Complemental strand, 26817778 - 26817743
Alignment:
Q  733 aaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||||||||||||||||    
T  26817778 aaacaaaataaaatatcgtagaagtagagaacaata 26817743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 1423120 - 1423078
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 769  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  1423120 acaccaaaacaaaataaaatatcgtaggagtagagaaaaataa 1423078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 18675518 - 18675452
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    |||||||||||||||||||||||| || ||||||||| ||||| |  || ||||||||||| |||||    
T  18675518 acaccaaaacaaaataaaatatcgcaggagtagagaaaaataacacatgcgaagtagactgaaattt 18675452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 34043710 - 34043643
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  34043710 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 34043643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 20990604 - 20990538
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  20990604 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 20990538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 727 - 844
Target Start/End: Original strand, 31548801 - 31548920
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagttt 824  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |  || ||||||||||| |||||   |||| |||||||||||||| |||||||||     
T  31548801 acaccaaaacaaaataaaatatcatagaagtagagaacaatagcacttgcgaagtagactgaaattttaccaccaaagaataataacacaaaaaaagttg 31548900  T
Q  825 acattactaaacgcgtctca 844  Q
    |||||||||||  |||||||    
T  31548901 acattactaaattcgtctca 31548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 727 - 822
Target Start/End: Complemental strand, 25621987 - 25621891
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaatttac--acctaagaataataacaccaaaaaagt 822  Q
    |||||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||    || |||||||||||||||||| |||||    
T  25621987 acaccaaaacaaaataaaatatcgtaaaagtatagaacaataatca-tgtgaagtagactgaaattttagaacttaagaataataacaccaacaaagt 25621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 725 - 768
Target Start/End: Complemental strand, 6883802 - 6883759
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  6883802 agacaccaaaacaaaataagatatcgtagaagtagagaacaata 6883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 768
Target Start/End: Complemental strand, 7444087 - 7444046
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  7444087 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 7444046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 646
Target Start/End: Original strand, 31548615 - 31548723
Alignment:
Q  538 gtttctagagttttacatgtcttaaacataatatgataaaagagtctcttgcataatacatcttaaatttcataagctcattgttttgattttgttaggt 637  Q
    ||||||||||||||||| |||||| || |||||||| ||||| ||| ||| ||||||||||   ||| ||  | || |||||||| | ||||| ||||||    
T  31548615 gtttctagagttttacaggtcttagacttaatatgagaaaagggtcccttacataatacataacaaacttttttagttcattgttgttattttattaggt 31548714  T
Q  638 cttcatttc 646  Q
    |||||||||    
T  31548715 cttcatttc 31548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 44322160 - 44322227
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||| |||||    
T  44322160 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 44322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 6221552 - 6221485
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  6221552 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 6221485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 33015131 - 33015198
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  33015131 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 33015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 44313981 - 44314048
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  44313981 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcaaatgtgaagtagactgaaattt 44314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 2554221 - 2554155
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||| ||||||| || |||||||||| ||||  |  |||||||||||||| |||||    
T  2554221 acaccaaaacaaaatgaaatatcctacaagtagagaaaaatagcacatgtgaagtagactgaaattt 2554155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 725 - 822
Target Start/End: Complemental strand, 10142684 - 10142585
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    |||||||||||||||||||||| ||||||||||| |||||||||  |  |||||||||||||| |||||   ||||| ||||||||||||||||||||||    
T  10142684 agacaccaaaacaaaataaaatgtcgtagaagtatagaacaatagcacatgtgaagtagactgaaattttagcacctgagaataataacaccaaaaaagt 10142585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 729 - 818
Target Start/End: Complemental strand, 13957785 - 13957694
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 818  Q
    |||||||||||||||||||||||||||||| |||||||||  |  ||  |||||||||| |||||   |||||||||||||||| |||||||    
T  13957785 accaaaacaaaataaaatatcgtagaagtatagaacaatagcacgtgcaaagtagactgaaatttgagcacctaagaataataataccaaaa 13957694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 725 - 793
Target Start/End: Complemental strand, 52460708 - 52460640
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||    
T  52460708 agacaccgaaacaaaataaaataccgtagaagtagagaacaataacacatgcgaagtagactgaaattt 52460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 725 - 782
Target Start/End: Complemental strand, 25201833 - 25201776
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagta 782  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||| || |||||||    
T  25201833 agacaccaacacaagataaaataccgtagaagtagagaacaataatacctttgaagta 25201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 768
Target Start/End: Original strand, 3665085 - 3665128
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3665085 agacaccaaaacaaaataaaataccatagaagtagagaacaata 3665128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 729 - 765
Target Start/End: Original strand, 24611029 - 24611065
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaaca 765  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24611029 accaaaacaaaataaaataccgtagaagtagagaaca 24611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 10094960 - 10095027
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  10094960 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 10095027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 731 - 822
Target Start/End: Original strand, 42511284 - 42511377
Alignment:
Q  731 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    ||||||| |||||||||||||||||||| |||||||||  |   |  |||||||||| |||||   ||||||| |||| |||||||||||||||    
T  42511284 caaaacataataaaatatcgtagaagtatagaacaatagcacacgcaaagtagactgaaattttagcacctaaaaatattaacaccaaaaaagt 42511377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 768
Target Start/End: Complemental strand, 31915633 - 31915592
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||| | |||||||||| |||||||    
T  31915633 acaccaaaacaaaataaaataccatagaagtagacaacaata 31915592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 726 - 844
Target Start/End: Original strand, 23231934 - 23232054
Alignment:
Q  726 gacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagtt 823  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||  |||||| |||| |||||    |||||||||||||||||| ||||| |||    
T  23231934 gacaccaaaataaaataaaataccgtagaagtagagaacaataacacctacgaagtatactgaaattttagtacctaagaataataacacaaaaaaggtt 23232033  T
Q  824 tacattactaaacgcgtctca 844  Q
     ||||||||||| | ||||||    
T  23232034 gacattactaaatgtgtctca 23232054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 725 - 818
Target Start/End: Original strand, 9381777 - 9381872
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaa 818  Q
    |||||||||||||||||||| ||||||||||||| |||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||    
T  9381777 agacaccaaaacaaaataaagtatcgtagaagtatagaacaatagcacatgcgaagtagactgaaattttagcacctaagaataataacacaaaaa 9381872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 725 - 822
Target Start/End: Original strand, 11648049 - 11648148
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagt 822  Q
    |||||| ||||||||||||||||   || |||||| ||||||||| |  || ||||||||||| |||||   ||||||||||||||||||||||||||||    
T  11648049 agacacaaaaacaaaataaaatactataaaagtagtgaacaataacacatgcgaagtagactgaaattttagcacctaagaataataacaccaaaaaagt 11648148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 1981762 - 1981695
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  || |||||||||||||| |||||    
T  1981762 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcatatgtgaagtagactgaaattt 1981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 16729895 - 16729829
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |  || ||||||||||| |||||    
T  16729895 acaccaaaacaaaataaaatatcgtagaagtagagaaaaatagcacatgcgaagtagactgaaattt 16729829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 725 - 822
Target Start/End: Original strand, 602067 - 602166
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    ||||| |||||||||||||||||| || ||||||||||||||||  ||||   |||||  ||  |||||   || |||||||||||||||||||||||||    
T  602067 agacaacaaaacaaaataaaatattgttgaagtagagaacaatagcatctacaaagtaagcttaaattttagcaactaagaataataacaccaaaaaagt 602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 768
Target Start/End: Original strand, 7263571 - 7263612
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  7263571 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 7263612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 725 - 822
Target Start/End: Original strand, 8113441 - 8113540
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || |||||| |||| |||||   ||||||||||||||||||| ||||||||    
T  8113441 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtacactgaaattttagcacctaagaataataacacaaaaaaagt 8113540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 735 - 822
Target Start/End: Original strand, 43178549 - 43178638
Alignment:
Q  735 acaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    ||||||||||||||||||| |||| |||||||||  | || ||||||| ||| ||||||  ||||||||||| |||||||||||||||||    
T  43178549 acaaaataaaatatcgtaggagtaaagaacaatagcacctatgaagtaaactacaattttaacacctaagaacaataacaccaaaaaagt 43178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 727 - 768
Target Start/End: Original strand, 20394724 - 20394765
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20394724 acaccaaaacaaaataaaatatcgtagaagtagagaaaaata 20394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 729 - 822
Target Start/End: Original strand, 24441602 - 24441697
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    ||||||| | ||||||||||| |||||||| |||||||||  |  ||| |||||||||| ||| |  ||||||||||||||||||| |||||||||    
T  24441602 accaaaatagaataaaatatcatagaagtatagaacaatagcacatgtaaagtagactgaaatattaacacctaagaataataacagcaaaaaagt 24441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 8389237 - 8389304
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  |||||||||||||| |||||    
T  8389237 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagactgaaattt 8389304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 726 - 768
Target Start/End: Complemental strand, 9420845 - 9420803
Alignment:
Q  726 gacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  9420845 gacaccaacacataataaaatatcgtagaagtagagaacaata 9420803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 731 - 793
Target Start/End: Complemental strand, 21864020 - 21863958
Alignment:
Q  731 caaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| |||||||| || |||||    
T  21864020 caaaacaaaataaaataccgtagaagtagagaacaatagcacctgcgaagtagagtgaaattt 21863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 768
Target Start/End: Original strand, 3123703 - 3123746
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||    
T  3123703 agacaccaaaacaaaataaaataccgtagaaatagataacaata 3123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 13754280 - 13754214
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  13754280 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 13754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 727 - 768
Target Start/End: Original strand, 35477916 - 35477957
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||| |||||||||| |||||||||| ||||    
T  35477916 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaata 35477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 725 - 822
Target Start/End: Complemental strand, 44879986 - 44879887
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |  || ||||||||||  |||||   ||||||||||||||||||||||| ||||    
T  44879986 agacaccaaaacaaaataaaatattgtagaagtatagaacaataacacatgcgaagtagactaaaattttagcacctaagaataataacaccaaacaagt 44879887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 725 - 821
Target Start/End: Complemental strand, 47185517 - 47185419
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaag 821  Q
    ||||| |||||||| |||||||||||||||| || |||||||||  |  |||||||||||||| |||||  |||||||||||||||||||||| |||||    
T  47185517 agacatcaaaacaacataaaatatcgtagaaatatagaacaatagcaaatgtgaagtagactgaaattttgacacctaagaataataacaccagaaaag 47185419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 725 - 793
Target Start/End: Original strand, 33100367 - 33100435
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||||||  | ||||| ||||||||||||| |  || ||||||||||| |||||    
T  33100367 agacaccaaaacaaaataaaatgccttagaaatagagaacaataacacatgcgaagtagactgaaattt 33100435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 785
Target Start/End: Complemental strand, 15761025 - 15760966
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagac 785  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| |  ||||||||||||    
T  15761025 acaccaaaacaaaataaaaataccgtagaagtagagaaaaataacacatgtgaagtagac 15760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 19157259 - 19157192
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  19157259 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 19157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 27941454 - 27941521
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  27941454 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 27941521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 52448308 - 52448242
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||| |||||||||| |||||||||| ||||  |  || ||||||||||| |||||    
T  52448308 acaccaaaacaaaatgaaatatcgtacaagtagagaaaaatagcacatgcgaagtagactgaaattt 52448242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 725 - 822
Target Start/End: Complemental strand, 12028297 - 12028198
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    |||||| |||||||||||||||||| |||||||| ||||||| || |  |||||||||||||| |||||   ||||||| ||||||||||||||||||||    
T  12028297 agacacaaaaacaaaataaaatatcctagaagtatagaacaacaacacatgtgaagtagactgaaattttagcacctaaaaataataacaccaaaaaagt 12028198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 725 - 793
Target Start/End: Complemental strand, 9023591 - 9023523
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  || |||||| |||| |||||    
T  9023591 agacaccaaaacaaaataaaatatcgtaaaagtagagaacaataatacatgcgaagtatactgaaattt 9023523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 727 - 768
Target Start/End: Complemental strand, 44310813 - 44310772
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44310813 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 44310772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 725 - 769
Target Start/End: Original strand, 42055752 - 42055796
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataa 769  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagagaacaataa 42055796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 727 - 822
Target Start/End: Complemental strand, 48646465 - 48646364
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaaca--ataata---tctgtgaagtagactgcaattta-cacctaagaataataacaccaaaaaa 820  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||   | || ||| ||||||  | |||| ||||||||||||||||||||||||||    
T  48646465 acaccaacacaaaataaaatatcgtagaagtatagaacaatataatagattatgcgaaatagactaaattttagcacctaagaataataacaccaaaaaa 48646366  T
Q  821 gt 822  Q
    ||    
T  48646365 gt 48646364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 760
Target Start/End: Original strand, 23664046 - 23664079
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtaga 760  Q
    ||||||||||||||||||||||||||||||||||    
T  23664046 acaccaaaacaaaataaaatatcgtagaagtaga 23664079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 767
Target Start/End: Original strand, 5208382 - 5208422
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaat 767  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  5208382 acaccaaaataaaataaaatatcgtagaagtatagaacaat 5208422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 21906545 - 21906478
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  21906545 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 21906478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 34307384 - 34307451
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |  ||||||||||| || |||||    
T  34307384 acaccaaaacaaaataaaaatatcgtagaagtagagaaaaatagcacatgtgaagtagaatgaaattt 34307451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 48596290 - 48596357
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  48596290 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 48596357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Original strand, 42055752 - 42055789
Alignment:
Q  690 agacaccaaaagaaaataaaataccgtagaagttgaga 727  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  42055752 agacaccaaaacaaaataaaataccgtagaagtagaga 42055789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 725 - 793
Target Start/End: Original strand, 13820548 - 13820616
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||||||| |||||||||||||||||| || |  |||||||||||||| |||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagagaacaacaacacatgtgaagtagactgaaattt 13820616  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 725 - 820
Target Start/End: Original strand, 43170958 - 43171055
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaa 820  Q
    |||||||||||||||||||||||||||||||| |  ||||||||  |  || ||||||||||| |||||   ||||||||||||||||||| ||||||    
T  43170958 agacaccaaaacaaaataaaatatcgtagaagcatggaacaatagcacatgcgaagtagactgtaattttagcacctaagaataataacacgaaaaaa 43171055  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 768
Target Start/End: Complemental strand, 29789960 - 29789921
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  29789960 accaaaacaaaataaaatatcgtagaagtatagaacaata 29789921  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 768
Target Start/End: Complemental strand, 37135252 - 37135209
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  37135252 agacaccaaaacaacataaaatatcttagaagtagagaacaata 37135209  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 793
Target Start/End: Original strand, 5578547 - 5578613
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    |||||||||||||||||||||||||| |||||||||| ||||  || ||  |||||||||| |||||    
T  5578547 acaccaaaacaaaataaaatatcgtaaaagtagagaaaaatagcatatgcaaagtagactgaaattt 5578613  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 729 - 844
Target Start/End: Original strand, 8805959 - 8806076
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattta--cacctaagaataataacaccaaaaaagtttac 826  Q
    ||||||||||||||||||| |||||||||||| |||||||  | ||   |  || |||| | |||   ||||||||| ||||||||| ||||||||| ||    
T  8805959 accaaaacaaaataaaataccgtagaagtagataacaatagcaccttcaacatatactgaagttttagcacctaagagtaataacacaaaaaaagttgac 8806058  T
Q  827 attactaaacgcgtctca 844  Q
    ||||||||| ||||||||    
T  8806059 attactaaatgcgtctca 8806076  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 727 - 769
Target Start/End: Complemental strand, 26402439 - 26402397
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataa 769  Q
    ||||||||||||||||||||| ||||||||||| |||||||||    
T  26402439 acaccaaaacaaaataaaataccgtagaagtagcgaacaataa 26402397  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 768
Target Start/End: Original strand, 5120439 - 5120480
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  5120439 acaccaaaacaaaataaaataccgtagaagtatagaacaata 5120480  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 768
Target Start/End: Original strand, 39537338 - 39537379
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  39537338 acaccaaaacaaaataaaatatcttagaagtagagaaaaata 39537379  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 729 - 793
Target Start/End: Complemental strand, 29150760 - 29150696
Alignment:
Q  729 accaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| |||| ||||||||| |||||| |  || ||||||||||| |||||    
T  29150760 accaaaacaaaataaaataccgtaaaagtagagagcaataacacttgcgaagtagactgaaattt 29150696  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 768
Target Start/End: Original strand, 16686673 - 16686716
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaata 768  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  16686673 agacaccaaaacaaaataaaataccgtataagtatagaacaata 16686716  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 23963016 - 23962949
Alignment:
Q  727 acaccaaaacaaaataaaa-tatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||||||||||||||||| || ||||||||||||||| ||||  |  |||||||||||||| |||||    
T  23963016 acaccaaaacaaaataaaaataccgtagaagtagagaaaaatagcacatgtgaagtagactgaaattt 23962949  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 727 - 793
Target Start/End: Complemental strand, 13490555 - 13490489
Alignment:
Q  727 acaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    |||||||||||||||||||| ||||||||||| |||| ||||  |  || ||||||||||| |||||    
T  13490555 acaccaaaacaaaataaaatgtcgtagaagtatagaaaaatagcacatgcgaagtagactgaaattt 13490489  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Original strand, 13820548 - 13820585
Alignment:
Q  690 agacaccaaaagaaaataaaataccgtagaagttgaga 727  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  13820548 agacaccaaaacaaaataaaataccgtagaagtagaga 13820585  T

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Target: scaffold1266 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 793
Target Start/End: Complemental strand, 1740 - 1672
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| |  | |||||||||||| |||||    
T  1740 agacagcaaaccaaaataaaataccgtagaagtagagaacaataacacttatgaagtagactgaaattt 1672  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 822
Target Start/End: Complemental strand, 1135 - 1036
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt--acacctaagaataataacaccaaaaaagt 822  Q
    ||||||||||||||||||||||||| ||||| || |||||||||  |  ||  |||||||||  |||||  | ||||||||||||||||||| |||||||    
T  1135 agacaccaaaacaaaataaaatatcatagaaatatagaacaatagcacatgcaaagtagactaaaattttaaaacctaagaataataacacccaaaaagt 1036  T

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Target: scaffold0263 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 725 - 793
Target Start/End: Original strand, 18278 - 18346
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaagtagagaacaataatatctgtgaagtagactgcaattt 793  Q
    ||||| |||| |||||||||||| | ||||||||||||||||||| |  | |||||||||||| |||||    
T  18278 agacagcaaaccaaaataaaataccatagaagtagagaacaataacacttatgaagtagactgaaattt 18346  T

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Target: scaffold0116 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 756
Target Start/End: Complemental strand, 41139 - 41108
Alignment:
Q  725 agacaccaaaacaaaataaaatatcgtagaag 756  Q
    ||||||||||||||||||||||||||||||||    
T  41139 agacaccaaaacaaaataaaatatcgtagaag 41108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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