View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9415_low_13 (Length: 252)
Name: NF9415_low_13
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9415_low_13 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 5920713 - 5920960
Alignment:
| Q |
6 |
ggagaagcagagatgctaatagaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactag |
105 |
Q |
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| T |
5920713 |
ggagtagcagagatgctagtagaaacaaaaggagtgacttggatatggttggtggtggaatttgaagtagaagggagagatgatgaggaaaccaaacttg |
5920812 |
T |
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| Q |
106 |
catgttgtagcaa-ggaaacaagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccatttt |
204 |
Q |
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| T |
5920813 |
cctgttgtagcaaaggaaacaagttgagtatattgctctggagacaaacaggtaccagaacctgtagagccccccaaaccatgatccaatgcaccatttt |
5920912 |
T |
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| Q |
205 |
catcaaggatctcatgagtagctgcatttactctagattgttgcttag |
252 |
Q |
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| T |
5920913 |
catcaaggatctcatgagtagctgcatttcctcttgattgttgcttag |
5920960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 26968778 - 26968721
Alignment:
| Q |
96 |
accaaactagcatgttgtagcaaggaaacaagttgagtatattgctctggagacaaac |
153 |
Q |
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| T |
26968778 |
accaaactagcctgttgtagcaaggaaactagttgagcatattgctcttgagataaac |
26968721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 20325022 - 20325238
Alignment:
| Q |
6 |
ggagaagcagagatgctaatagaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactag |
105 |
Q |
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| T |
20325022 |
ggagaagcagaaatgttattggaaacaaaaggagtggtttggacatgattggtggtagcatttgaagtaggaggaggagatgatgaggaaatcaaactag |
20325121 |
T |
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| Q |
106 |
catgttgtagcaaggaaacaagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttc |
205 |
Q |
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| T |
20325122 |
cctgctgcagcaaggaaacaagttgagtatattgctctggagacaaactagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttc |
20325221 |
T |
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| Q |
206 |
atcaaggatctcatgag |
222 |
Q |
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| T |
20325222 |
atcagggatctcatgag |
20325238 |
T |
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