View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9415_low_15 (Length: 229)
Name: NF9415_low_15
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9415_low_15 |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 5921182 - 5920962
Alignment:
| Q |
7 |
ctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
106 |
Q |
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| T |
5921182 |
ctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatc |
5921083 |
T |
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| Q |
107 |
acaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatc |
206 |
Q |
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| T |
5921082 |
acaaggacgtggtaaaggt--tcttttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatc |
5920985 |
T |
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| Q |
207 |
aaaaacatggccaccctagtttt |
229 |
Q |
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| T |
5920984 |
aaaaacatggctaccctagtttt |
5920962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
161 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
216 |
Q |
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| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 20325484 - 20325267
Alignment:
| Q |
7 |
ctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
106 |
Q |
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| T |
20325484 |
ctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatc |
20325385 |
T |
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| Q |
107 |
acaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatc |
206 |
Q |
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| T |
20325384 |
ccaaggacgtggtaaagg-----ttttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatc |
20325290 |
T |
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| Q |
207 |
aaaaacatggccaccctagtttt |
229 |
Q |
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| T |
20325289 |
aactacatggtcatcctagtttt |
20325267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
167 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
216 |
Q |
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| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
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