View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9415_low_3 (Length: 470)

Name: NF9415_low_3
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9415_low_3
NF9415_low_3
[»] chr4 (16 HSPs)
chr4 (19-326)||(3957799-3958106)
chr4 (63-244)||(4007473-4007654)
chr4 (36-143)||(3998481-3998588)
chr4 (116-319)||(4022686-4022890)
chr4 (262-318)||(3935711-3935767)
chr4 (258-317)||(3922352-3922411)
chr4 (36-87)||(4022627-4022678)
chr4 (264-318)||(3815439-3815493)
chr4 (36-87)||(3958138-3958189)
chr4 (75-173)||(3984567-3984668)
chr4 (195-318)||(3999811-3999934)
chr4 (259-318)||(4007672-4007731)
chr4 (259-318)||(3998681-3998740)
chr4 (258-319)||(3984753-3984814)
chr4 (195-244)||(3998614-3998663)
chr4 (37-76)||(4015067-4015107)
[»] chr6 (4 HSPs)
chr6 (324-460)||(8269630-8269766)
chr6 (327-460)||(795307-795440)
chr6 (327-460)||(800062-800195)
chr6 (327-460)||(8274348-8274481)
[»] chr5 (2 HSPs)
chr5 (327-460)||(19940577-19940710)
chr5 (327-460)||(19945331-19945464)
[»] chr7 (2 HSPs)
chr7 (327-460)||(6688641-6688774)
chr7 (327-460)||(6693381-6693514)
[»] chr8 (1 HSPs)
chr8 (327-460)||(26199352-26199484)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 3958106 - 3957799
Alignment:
Q  19 ctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3958106 ctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgatgatgcta 3958007  T
Q  119 agcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaaccctt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3958006 agcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgtttttatctcttaaggggattatgggtctgatgccaaaccctt 3957907  T
Q  219 ttaactccacctctggtctctctctatcaaagccaggtgttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3957906 ttaactccacctctggtctctctctatcaaagccgggtgttgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggta 3957807  T
Q  319 gcgcgaac 326  Q
    ||| ||||    
T  3957806 gcgtgaac 3957799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 4007473 - 4007654
Alignment:
Q  63 tctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccat 162  Q
    |||| ||||| ||||||||||||| | | ||||  |||||||||| ||| || ||||||||||||||| |||||||||| | ||||||||| ||||||||    
T  4007473 tctagatcaaattcttcatcttcaactgtaggagggaaatacataggatgatactaagcacagtcctattccatttgttcatataatcaaacaattccat 4007572  T
Q  163 ttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaacccttttaactccacctctggtctctctcta 244  Q
    || || || ||  || | || | || ||  | ||||||| || | |||||||||||||||||||||||||||||| ||||||    
T  4007573 tttttgaatgagattatgatatgttgagttgcttatggggcttatgccaaacccttttaactccacctctggtctttctcta 4007654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 143
Target Start/End: Original strand, 3998481 - 3998588
Alignment:
Q  36 ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactcca 135  Q
    |||||| ||||| ||||| || ||||||||||||||| ||||||||||||| | | ||||| |||||||||| ||  || ||||||||||||||| ||||    
T  3998481 ctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttcaactgtaggaaggaaatacataggacgatactaagcacagtcctattcca 3998580  T
Q  136 tttgttaa 143  Q
    ||||||||    
T  3998581 tttgttaa 3998588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 319
Target Start/End: Original strand, 4022686 - 4022890
Alignment:
Q  116 ctaagcacagtcctactccatttgttaacataatcaaataattcc-atttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaac 214  Q
    |||| |||||||||| |||||| ||||||||||||||| |||||| ||||||| || ||  ||  ||| | || || || ||||||| ||||  || |||    
T  4022686 ctaaccacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaac 4022785  T
Q  215 ccttttaactccacctctggtctctctctatcaaagcca--ggtgt-tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctag 311  Q
    |||||||| || ||||||||||||  |||||   || ||  | | | ||||||||| ||||||||||||||||||||| |||  || |||||||||||||    
T  4022786 ccttttaattcaacctctggtctcattctat---agacattgatttctgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctag 4022882  T
Q  312 ttaggtag 319  Q
    ||||||||    
T  4022883 ttaggtag 4022890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 3935767 - 3935711
Alignment:
Q  262 ccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 318  Q
    |||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3935711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 3922411 - 3922352
Alignment:
Q  258 ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggt 317  Q
    |||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||||||||    
T  3922411 ttgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggt 3922352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 4022627 - 4022678
Alignment:
Q  36 ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag 87  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  4022627 ctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag 4022678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 3815439 - 3815493
Alignment:
Q  264 ttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 318  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3815493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 3958189 - 3958138
Alignment:
Q  36 ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag 87  Q
    |||||||||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  3958189 ctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttcag 3958138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 3984567 - 3984668
Alignment:
Q  75 tcttcatcttcagccggaggaaagaaatacatatgataatgctaagca---cagtcctactccatttgttaacataatcaaataattccatttgttcaac 171  Q
    |||||||||||||| | || || |||||||||| ||| ||||||||||   |||||||  |||||||||||| |  |||||| ||||||||||| |||||    
T  3984567 tcttcatcttcagctgcagtaaggaaatacataggatgatgctaagcagcacagtcctcttccatttgttaatacgatcaaacaattccatttgctcaac 3984666  T
Q  172 ga 173  Q
    ||    
T  3984667 ga 3984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 3999811 - 3999934
Alignment:
Q  195 ttatgggtctgacgccaaacccttttaactccacctctggtctctctctatcaaagccaggtgttgtccttgctgtaaccttgattttaaaccttgtcta 294  Q
    ||||||| |||| ||||||||||||||||||||||| ||  ||  |||| | |||    ||  |||||||||||| |||||||||||| |||||||| |     
T  3999811 ttatggggctgatgccaaacccttttaactccacctttgaacttcctctttgaaaattgggctttgtccttgctgcaaccttgattttgaaccttgtatg 3999910  T
Q  295 cttttttgctatgctagttaggta 318  Q
     ||||| ||||| |||||||||||    
T  3999911 atttttcgctattctagttaggta 3999934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 4007672 - 4007731
Alignment:
Q  259 tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 318  Q
    ||||||||||||||||||||||||||||||||| |  || |||||||  |||||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggta 4007731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 3998681 - 3998740
Alignment:
Q  259 tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 318  Q
    |||||||||||||||||| |||||||||||||| |  || |||||||  |||||||||||    
T  3998681 tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggta 3998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 3984753 - 3984814
Alignment:
Q  258 ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtag 319  Q
    ||||||||||||||||||||||||||| |  |||||   |||| |||||||| |||||||||    
T  3984753 ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtag 3984814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 3998614 - 3998663
Alignment:
Q  195 ttatgggtctgacgccaaacccttttaactccacctctggtctctctcta 244  Q
    ||||||| || | |||||||||||||||||||||||| ||||| ||||||    
T  3998614 ttatggggcttatgccaaacccttttaactccacctcgggtctttctcta 3998663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 4015067 - 4015107
Alignment:
Q  37 tacttacatcaaactatggacttg-tgtctaaatcaacttc 76  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  4015067 tacttacatcaaactatagacttgttgtctaaatcaacttc 4015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 324 - 460
Target Start/End: Original strand, 8269630 - 8269766
Alignment:
Q  324 aactgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat 423  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8269630 aactgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat 8269729  T
Q  424 tataggttgcatttttctttcaaatagtaagcctatg 460  Q
    |||||||||||||||||||||||||||||||||||||    
T  8269730 tataggttgcatttttctttcaaatagtaagcctatg 8269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 327 - 460
Target Start/End: Complemental strand, 795440 - 795307
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  795440 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 795341  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  795340 aggttgcatttttctttcaaatagtaagcctatg 795307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 327 - 460
Target Start/End: Complemental strand, 800195 - 800062
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  800195 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 800096  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  800095 aggttgcatttttctttcaaatagtaagcctatg 800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 8274348 - 8274481
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8274348 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 8274447  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  8274448 aggttgcatttttctttcaaatagtaagcctatg 8274481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 19940577 - 19940710
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19940577 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19940676  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  19940677 aggttgcatttttctttcaaatagtaagcctatg 19940710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 19945331 - 19945464
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19945331 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19945430  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  19945431 aggttgcatttttctttcaaatagtaagcctatg 19945464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 6688641 - 6688774
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6688641 tgttggtgaacattgtttaaggacccacatgcacgtgggataaccagccaaagcaatttactgaagcaaattgtcacacaaagtctcatgcatttattat 6688740  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  6688741 aggttgcatttttctttcaaatagtaagcctatg 6688774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 6693381 - 6693514
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  6693381 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaaacaatttgttgaaacaaattgtcacacaaagtctcatgcatttattat 6693480  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  6693481 aggttgcatttttctttcaaatagtaagcctatg 6693514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 327 - 460
Target Start/End: Original strand, 26199352 - 26199484
Alignment:
Q  327 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 426  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26199352 tgttggtgaacattgtgtaaggacccacatgcacgtgg-ataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatatattat 26199450  T
Q  427 aggttgcatttttctttcaaatagtaagcctatg 460  Q
    ||||||||||||||||||||||||||||||||||    
T  26199451 aggttgcatttttctttcaaatagtaagcctatg 26199484  T

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