View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9415_low_6 (Length: 406)
Name: NF9415_low_6
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9415_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 31590679 - 31591059
Alignment:
| Q |
11 |
cataggttatttgaaaatgaatgttggattgattgtgctagttttgtttcttgtgttgtggttagattatgaatattcactgcatggaattccggaaggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31590679 |
cataggttatttgaaaatgaatgttggattgattttgctagttttgtttcttgtgttgtggttagattatgaatattcactacatggaattccggaaggg |
31590778 |
T |
|
| Q |
111 |
agtattgagagggagaaagttaagcatgaagttcacctccgttccgcggaaagacttcgagacctgtgttttaagaatggagggatttatataaagcttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31590779 |
agtattgagagggagaaagttaagcatgaagttcacctccgttccgcggaaagacttcgagacctgtgttttaagaatggagggatttatataaagcttg |
31590878 |
T |
|
| Q |
211 |
gacagcatcttgggcaattggtatatttcggttcaaactgtgtagtcaaattattatgtactcaacacgatatgcaatgcttagttgtttgattgttcat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
31590879 |
gacagcatcttgggcaattggtatatttcggttcaaactgtgcagtcaaattattatgtactcaacacgataggcaatgcttagttgtttgtttgtttat |
31590978 |
T |
|
| Q |
311 |
tgtcaatgacaggaatacttagttcctcaagagtatgttcagaccatgagggagtccatgctaaatagatgtccggtttct |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31590979 |
tgtcaatgacaggaatacttagttcctcaagagtatgttcagaccatgagggagtccatgctaaatagatgtccggtttct |
31591059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University