View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9415_low_7 (Length: 387)
Name: NF9415_low_7
Description: NF9415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9415_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 148 - 370
Target Start/End: Original strand, 41755734 - 41755959
Alignment:
| Q |
148 |
cagtttagggttccctaacttctaccgtagaacgatggatacaannnnnnnnna---aagaatgtacaattgtttttgagttgctacactgacaaatgca |
244 |
Q |
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| T |
41755734 |
cagtttagggttccctaacttctaccgtagaacgatggatacaattttattttttttaagaatgtacaattgtttttgagttgctacactgacaaatgca |
41755833 |
T |
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| Q |
245 |
taaataaaggaagaaatgtagggtaaaaattgtgaaaataagttggtttataattgaacaaagtatttataatgtgtttattgcctataaactacatttc |
344 |
Q |
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| T |
41755834 |
taaataaaggaagaaatgtagggtaaaaattgtgaaaataagttggtttataattgaacaaagtatttataatgtgtttattgcctataaactacatttc |
41755933 |
T |
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| Q |
345 |
ttaacctccattcaactaatttccac |
370 |
Q |
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| T |
41755934 |
ttaacctccattcaactaatttccac |
41755959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 41755642 - 41755719
Alignment:
| Q |
17 |
ttgtgatatcctctagtttgagttggtcgtatagtgttagtttgagatcttgaaatgtgtttatcctcaaatttgatt |
94 |
Q |
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| T |
41755642 |
ttgtgatatcctctagtttgagttggtcgtatagtgttagtttgagatcttgaaatgtgtttatccttaaatttgatt |
41755719 |
T |
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