View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_1 (Length: 706)
Name: NF9416_low_1
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 21 - 695
Target Start/End: Complemental strand, 47533396 - 47532723
Alignment:
| Q |
21 |
ccacacagttggtagtttgggtccgggggattctcggttgcgaagaaaagaagctcttattggaaaataaattaatgcagatcaatttactccatgagca |
120 |
Q |
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| T |
47533396 |
ccacacagttggtagtttgggtccaggggattctcggttgcgaagaaaagaagctcttattggaaaataaattaatgcagatcagtttactccatgagca |
47533297 |
T |
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| Q |
121 |
gaagaagcctaactgttgaaccacaaatactaacagaccctactctaggataacatgatcattagaagaacaagaaattaagctgtccatagcaaagagg |
220 |
Q |
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| T |
47533296 |
gaagtagcttaactgttgaaccacaaatactaacagaccctactctaggataacatgataattagaagaacaagaaattaagctgtccatagcaaagagg |
47533197 |
T |
|
| Q |
221 |
caaaattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatc |
320 |
Q |
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| T |
47533196 |
cataattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatc |
47533097 |
T |
|
| Q |
321 |
aaaatgcatttaatgttctcactatcagttaataccgtaattcacattgcaacagggttctcaaattcactagcaatttaagcagagtataagctgattc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47533096 |
aaaatgcatttaatgttctcactatcagttaataccgtaattcacattgcaacagggttctcaaattcactagcaatttaaccagagtataagctgattc |
47532997 |
T |
|
| Q |
421 |
atcctgaatttaacnnnnnnnaccatagctgcagttttagttgtttccttttctattgatcactagttttccttccggtactttcactatcagtgtcggt |
520 |
Q |
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| T |
47532996 |
atcctgaatttaac-ttttttaccatagctgcagttttagttgtttccttttctattgatcactagttttccttccagtactttcactatcagtgtcggt |
47532898 |
T |
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| Q |
521 |
ggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtac |
620 |
Q |
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| T |
47532897 |
ggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtggcttcactttcactgtcactttcttccaaaaggtac |
47532798 |
T |
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| Q |
621 |
aggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttc |
695 |
Q |
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| T |
47532797 |
aggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattcgcctttgcttc |
47532723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 652
Target Start/End: Original strand, 39583603 - 39583688
Alignment:
| Q |
567 |
tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagc |
652 |
Q |
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|||||||| || |||||| ||||||||||||||||||||||||||||| | ||||| |||||| |||||||| ||||| ||||| |
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| T |
39583603 |
tcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagc |
39583688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 39627335 - 39627257
Alignment:
| Q |
571 |
tatcagtatctgtggcttcactttcactgtcactttcttc---caaaacgtacaggtcatagatgcatatcaaggcagc |
646 |
Q |
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| T |
39627335 |
tatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaacgcagc |
39627257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 646
Target Start/End: Complemental strand, 39616598 - 39616535
Alignment:
| Q |
586 |
cttcactttcactgtcacttt---cttccaaaacgtacaggtcatagatgcatatcaaggcagc |
646 |
Q |
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| T |
39616598 |
cttcactttcactgtcactttcttcttctaaaaggtacaggtaatagatgcctatcaacgcagc |
39616535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 230
Target Start/End: Complemental strand, 39617415 - 39617304
Alignment:
| Q |
117 |
agcagaagaagcctaactgttgaaccacaaatactaacagaccctactctaggataacatgatcattagaagaacaagaaattaagctgtccatagcaaa |
216 |
Q |
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||||||| ||||||| ||||||| | || ||||||||||||||| |||||||| |||||||| || ||||||| |||||| ||| ||| || ||||| |
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| T |
39617415 |
agcagaacaagcctagctgttgagc-actaatactaacagacccgactctagg-taacatgaaaatcagaagaaacagaaatgaaggtgtgcacggcaaa |
39617318 |
T |
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| Q |
217 |
gaggcaaaattgtt |
230 |
Q |
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| T |
39617317 |
gaaacaaaattgtt |
39617304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 39627650 - 39627545
Alignment:
| Q |
208 |
catagcaaagaggcaaaattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaat-aaatttcttcgaaaacttg |
306 |
Q |
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||||||||||||||||||||||| |||| | | ||||||| ||| | |||||||||||||| | | |||||| | ||| ||||||| ||| |||||| |
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| T |
39627650 |
catagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactactaatttcataaaacaaaataataaaatttcctcgttaacttg |
39627551 |
T |
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| Q |
307 |
aaaatt |
312 |
Q |
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|||||| |
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| T |
39627550 |
aaaatt |
39627545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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