View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_10 (Length: 399)
Name: NF9416_low_10
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 236 - 381
Target Start/End: Original strand, 8133216 - 8133361
Alignment:
| Q |
236 |
ctgcagtgatgaatgaagaagaaaattcacatgttagactctagagatttttatgatcaatgagaatggcaacttattcactaagcagaaacttgtaata |
335 |
Q |
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| T |
8133216 |
ctgcagtgaagaatgaagaagaaaattcacatgttagactctagagatttttatgatcaatgagaatggcaacttattcactaagcagaaacttgtaata |
8133315 |
T |
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| Q |
336 |
tatctatgcacctatgnnnnnnnattttattaaatttggacatata |
381 |
Q |
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| T |
8133316 |
tatctatgcacctatgtttttttattttattaaatttggacatata |
8133361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 8132985 - 8133107
Alignment:
| Q |
10 |
gtttggtgttcgtatctgagtcatgtcacattgtgtacatgttttgtggatttaattgaat-----tgtaatattctgccttttgttgcagtatacgtta |
104 |
Q |
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| T |
8132985 |
gtttggtgttcgtatctgagtcatgtcacattctgtacatgttttgtggatttaattgaattagtatgtaatattctgccttttgttgcagtatacgtta |
8133084 |
T |
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| Q |
105 |
ttctgattcaaattatgagtaga |
127 |
Q |
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| T |
8133085 |
ttctgattcaaattatgagtaga |
8133107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 8151172 - 8151273
Alignment:
| Q |
252 |
agaagaaaattcacatgttagactctagagatttttatgatcaatgagaatggcaa--cttattcactaagcagaaacttgtaatatatctatgcaccta |
349 |
Q |
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| T |
8151172 |
agaagaaaattcacatctcagactttagagattttcatgatcaatgagaatgtcaattcttattcgcaaagcaaaaacttgtaatatatctttgcaacta |
8151271 |
T |
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| Q |
350 |
tg |
351 |
Q |
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|| |
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| T |
8151272 |
tg |
8151273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 2806762 - 2806809
Alignment:
| Q |
75 |
atattctgccttttgttgcagtatacgttattctgattcaaattatgag |
123 |
Q |
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| T |
2806762 |
atattctgccttt-gttgcagtatacgctattctgattcaaattatgag |
2806809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 2806877 - 2806938
Alignment:
| Q |
241 |
gtgatgaatgaagaagaaaattcacatgttagactctagagatttttatgatcaatgagaatg |
303 |
Q |
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| T |
2806877 |
gtgatgaattaagaa-aaatttcacatgtcagacttcagagatttttataatcaatgagaatg |
2806938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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