View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9416_low_11 (Length: 386)

Name: NF9416_low_11
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9416_low_11
NF9416_low_11
[»] chr7 (6 HSPs)
chr7 (166-367)||(40662007-40662205)
chr7 (167-357)||(40675564-40675751)
chr7 (19-126)||(40661860-40661967)
chr7 (167-301)||(40656732-40656866)
chr7 (19-126)||(40675416-40675523)
chr7 (38-126)||(40656603-40656691)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 166 - 367
Target Start/End: Original strand, 40662007 - 40662205
Alignment:
Q  166 gggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctggg 265  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  40662007 gggagggagggccttctgtgcatagacgtagaccgcataatttccaatgagaaatgtcaacagcaacccaccaataacgaggagaacaatcaagtctggg 40662106  T
Q  266 ttgaacccttgagatccagcattctaaacatttccccaagagcaacnnnnnnnnnnnngcacttaaataaggtcatataagagagcaaaaagatattgta 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||    
T  40662107 ttgaacccttgagatccagcattctaaacatttccccaagagcaac---aaaaaaaaagcacttaaataaggtcatataagagagcaaaaagatattgta 40662203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 167 - 357
Target Start/End: Original strand, 40675564 - 40675751
Alignment:
Q  167 ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt 266  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675564 ggagggagggccttctgtgcataaacgtagagcgcgtaatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt 40675663  T
Q  267 tgaacccttgagatccagcattctaaacatttccccaagagcaacnnnnnnnnnnnngcacttaaataaggtcatataagagagcaaaaag 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||||||    
T  40675664 tgaacccttgagatccagcattctaaacatttccccaagagcaac---aaaaaaaaagcacttaaataaggtcatataacagagcaaaaag 40675751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 40661860 - 40661967
Alignment:
Q  19 cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40661860 cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc 40661959  T
Q  119 agcctctc 126  Q
    ||||||||    
T  40661960 agcctctc 40661967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 301
Target Start/End: Original strand, 40656732 - 40656866
Alignment:
Q  167 ggagggagggccttctgtgcatagacgtagagcgcataatttccaatgagaaatgtcaacagcaacccaccaataaccaggagaacaatcaagcctgggt 266  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  40656732 ggagggagggccttctgtgcataaacataaagcgcataatttccaatgaggaatgtcaacagcagcccaccaataaccaggagaactactaagcctgggt 40656831  T
Q  267 tgaacccttgagatccagcattctaaacatttccc 301  Q
    ||||||||||||||||||| ||||||| |||||||    
T  40656832 tgaacccttgagatccagctttctaaatatttccc 40656866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 40675416 - 40675523
Alignment:
Q  19 cacagaaccagaattcttgaaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttc 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  40675416 cacagaaccagaattctttaaaaagtacaaggtaatccacattcaacagaacatttgagtaaaatgcctttactctccaggtgcagagactccttgcttc 40675515  T
Q  119 agcctctc 126  Q
    ||||||||    
T  40675516 agcctctc 40675523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 40656603 - 40656691
Alignment:
Q  38 aaaaagtacaaggtaatccacattcaacagaacatttgagtacagtgcctctactctccaggtgcagagactccttgcttcagcctctc 126  Q
    |||||||||||||||||||||||||   |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  40656603 aaaaagtacaaggtaatccacattccgtagaacatttgagtacattgcccctactctccaggtgcagagactccttgcttcagtctctc 40656691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University