View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_12 (Length: 385)
Name: NF9416_low_12
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 37 - 286
Target Start/End: Original strand, 20951780 - 20952025
Alignment:
| Q |
37 |
ttatcatatataaaatattttgaagtctccacaatggtatcacaactgaaattttgacgtcattttgtcacaatataaaggtttgcagtgtaaccgcaac |
136 |
Q |
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| T |
20951780 |
ttatcatatataaaatattttgaagtctccacaatggtatcataactgaaattttgacggcattttgccacaatataaaggtttgcagtgtaa----aac |
20951875 |
T |
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| Q |
137 |
aacaatttaaaaccatggagtgtaccttagttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcaga |
236 |
Q |
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| T |
20951876 |
aacaatttaaaaccatggagtgtaccttagttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcaga |
20951975 |
T |
|
| Q |
237 |
aaccaaagtcttggatctatcatttttcgactttggcttagtatcaccac |
286 |
Q |
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| T |
20951976 |
aaccaaagtcttggatctatcatttttcgactttggcttagtatcaccac |
20952025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 20947728 - 20947844
Alignment:
| Q |
166 |
gttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatcatttttcg |
265 |
Q |
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| T |
20947728 |
gttatgttgggaaccaaagaacgtaatgcataaatcttatccttcatttgaccttgcctcctcctcgcataaaccaaagtcttggatctatcatttctcg |
20947827 |
T |
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| Q |
266 |
actttggcttagtatca |
282 |
Q |
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| T |
20947828 |
gctttggcttggtatca |
20947844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 20952062 - 20952120
Alignment:
| Q |
323 |
caggagaggagtagttatcaccatcattttctactcttatttccccctatgcttctcca |
381 |
Q |
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| T |
20952062 |
caggagaggagtagttatcaccatcattttctactcttaattcctccttagcttctcca |
20952120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 3668043 - 3667994
Alignment:
| Q |
98 |
attttgtcacaatataaaggtttgcagtgtaaccgcaacaacaatttaaa |
147 |
Q |
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| T |
3668043 |
attttatcacaatataaaggtttgtagtgtaaccgcacccgcaatttaaa |
3667994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 35474013 - 35473909
Alignment:
| Q |
159 |
taccttagttatattgggaaccaaagaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatca |
258 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||||||||||||||| | || || |||||| |||||||||| | ||||||||| |||||| |
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| T |
35474013 |
tacctttgtaatgttgggaaccaaagaacgcaatgcataaagcttatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatca |
35473914 |
T |
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| Q |
259 |
ttttt |
263 |
Q |
| |
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|||| |
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|
| T |
35473913 |
gtttt |
35473909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 38772160 - 38772117
Alignment:
| Q |
105 |
cacaatataaaggtttgcagtgtaaccgcaacaacaatttaaaa |
148 |
Q |
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| T |
38772160 |
cacaatataaaggtttgcagcgtaaccgcaacaacaatttaaaa |
38772117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 18081320 - 18081272
Alignment:
| Q |
105 |
cacaatataaaggtttgcagtgtaaccgcaacaacaatttaaaaccatg |
153 |
Q |
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||||||||||||| || ||||||| |||||| |||||||||||||||| |
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| T |
18081320 |
cacaatataaaggaatgtagtgtaatcgcaaccacaatttaaaaccatg |
18081272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 5939741 - 5939787
Alignment:
| Q |
107 |
caatataaaggtttgcagtgtaaccgcaacaacaatttaaaaccatg |
153 |
Q |
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| T |
5939741 |
caatataaagatttgcagtgtaaccgcgaccgcaatttaaaaccatg |
5939787 |
T |
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