View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_13 (Length: 364)
Name: NF9416_low_13
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 52422510 - 52422176
Alignment:
| Q |
20 |
agagaaatatccataacttggatcattctcccttcacatgtattccaaggcaagaataccagaattcttattatccttgcgtctcatcactctcatttca |
119 |
Q |
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| T |
52422510 |
agagaaatatccataacttggatcattctcccttcacatgtattccaaggcaagaataccagaattcttattatccttgcgtctcatcactctcatttca |
52422411 |
T |
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| Q |
120 |
aggatcttcttatgtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacac |
219 |
Q |
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| T |
52422410 |
aggatcttcttatgtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacac |
52422311 |
T |
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| Q |
220 |
cgcaagcattgcagagtgttttcggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagc |
319 |
Q |
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| T |
52422310 |
cgcaagcattgcagagtgttttcggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagc |
52422211 |
T |
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| Q |
320 |
attatggtctagagcagcaagaagtggcgcctttg |
354 |
Q |
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| T |
52422210 |
attatggtctagagcagcaagaagtggcgcctttg |
52422176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 110 - 300
Target Start/End: Complemental strand, 42714683 - 42714493
Alignment:
| Q |
110 |
tctcatttcaaggatcttcttatgtgagttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttg |
209 |
Q |
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| T |
42714683 |
tctcatttcaaggacctttttgtgcgaattggagtgcacagctggacaaaacgttggactagcagcaggccggtattcagggaaaagtcggccagacttg |
42714584 |
T |
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| Q |
210 |
taccgaacaccgcaagcattgcagagtgttttcggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcatt |
300 |
Q |
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| T |
42714583 |
taccgaacaccgcaagcattgcagagtgtttttggccccattggacctgccctccattgtggagtcttggttatctcacaatgcatgcatt |
42714493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 24480286 - 24480367
Alignment:
| Q |
243 |
ggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagcattat |
324 |
Q |
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| T |
24480286 |
ggcccctctgaccctatcctccattgtggagtcttcgtcgcctcacaatgtgtacatttcctcacaagtaccaaagcattat |
24480367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 40377534 - 40377598
Alignment:
| Q |
177 |
ggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagagtgtttt |
241 |
Q |
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| T |
40377534 |
ggccggtattcaggatagaggcggccggacctgtaccgaacaccacaagcattgcagagcgtttt |
40377598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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