View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_14 (Length: 362)
Name: NF9416_low_14
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 49950214 - 49950554
Alignment:
| Q |
18 |
aatatacctatcaaataatccaaaaagctccatttaacggaagcataagccttttcaaagcagattgattagtcgagactaagacaaatgataacatttg |
117 |
Q |
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| T |
49950214 |
aatatacctatcaaataatccaaaatt-tccatttaacggaagcataagccttttcaaagtagattggttagtcgagactaagacaaatgataacatttg |
49950312 |
T |
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| Q |
118 |
cgaactactcagctagaattttggcaagcaatttgtgcaataacctaccagtcagatatgtctaaaatcctaaccgaaaaggtgatgcgattttaggaat |
217 |
Q |
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| T |
49950313 |
cgaaccactcagctagaattctggcaagcaatttgtgcaataacctaccagttagatatgtctaaaatcctaaccgaaaaggtgatgcgattttaggaat |
49950412 |
T |
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| Q |
218 |
tagggtgaggaagtaggaagggaaacttggaggaagtgtagcattatagtgaaaccgaacgaacaaaatcccgaagtcctcactaagtatggacnnnnnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49950413 |
tagggtgaggaagtaggaagggaaacttggaggaagtgtagcattatagtgaaaccgaacgaacaaaatcccgaagtcctcactaagtatagacaaaaaa |
49950512 |
T |
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| Q |
318 |
ntcttaataaaagaaaaactaacatcatccaactccaaactc |
359 |
Q |
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||||||||||||||||| |||||||||||| |||| ||||| |
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| T |
49950513 |
ttcttaataaaagaaaaattaacatcatccagctccgaactc |
49950554 |
T |
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