View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9416_low_19 (Length: 310)

Name: NF9416_low_19
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9416_low_19
NF9416_low_19
[»] chr4 (14 HSPs)
chr4 (57-271)||(6672299-6672513)
chr4 (55-239)||(6590144-6590328)
chr4 (55-239)||(6813450-6813634)
chr4 (55-239)||(6794120-6794304)
chr4 (55-226)||(6750536-6750707)
chr4 (66-239)||(6648731-6648904)
chr4 (57-232)||(6500457-6500632)
chr4 (55-238)||(6624536-6624719)
chr4 (55-239)||(6535759-6535943)
chr4 (55-226)||(6725619-6725790)
chr4 (69-239)||(6548015-6548185)
chr4 (64-239)||(6833853-6834025)
chr4 (55-239)||(6713487-6713671)
chr4 (91-207)||(8412599-8412715)
[»] scaffold0373 (1 HSPs)
scaffold0373 (55-239)||(12000-12184)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 57 - 271
Target Start/End: Complemental strand, 6672513 - 6672299
Alignment:
Q  57 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672513 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 6672414  T
Q  157 ccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcacttctaaaagaaaaaatgca 256  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672413 ccaccggatgttcagtaacgaataactctgtcttatctaggaaacgggtgacacgttcaacaatattcttgatatcagcacttctaaaagaaaaaatgca 6672314  T
Q  257 ttgaaataggaatat 271  Q
    |||||||||||||||    
T  6672313 ttgaaataggaatat 6672299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 6590144 - 6590328
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| |||||||||||||||||||||||||| | || ||||||||| ||||| || |||||||| |||||||||||   ||||||||||| |||||||||    
T  6590144 ttttccccataccccccattccccatatccccaaaattaaaacatcatctgagttttggatgtttagtagcttagtcacagcttccacacgagattctac 6590243  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||||    
T  6590244 acccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgatgtgttcaacaatattcttgatatcagcactt 6590328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 6813634 - 6813450
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| ||||| |||||   || |||||| | |||||||||    
T  6813634 ttttacccataccccccattccccatatccctagaagtaaaacatcttctgagttttcgatgtttagtagtttagtcacagtttccacgcgagattctac 6813535  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||| |||| |||||    
T  6813534 acccactggatgttcagcaacgaataactctgtcctatctaacaaacgggtgacatgttcaacaatattcttgacatcatcactt 6813450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 6794304 - 6794120
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| || | |||||| || |||||||| | | ||||||||| ||||||||     
T  6794304 tttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgtttagcagcttagtcgcaacttccacacgagattctaa 6794205  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||||| |||||||||||||| ||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||    
T  6794204 acccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaacaatattcttgatatcagcactt 6794120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 6750707 - 6750536
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| ||| ||||||||||||||||||||||||| |  || ||||||||||| || ||||||||||| |||||||| | ||||||||||| |||||||||    
T  6750707 ttttacccgtaccccccattccccatatccctagcataaacacatcttctgatttttggatgttaaggagcttagtcgcagcttccacacgagattctac 6750608  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattctt 226  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||| ||||| ||||||||||||||||    
T  6750607 acccaccggatgttcagcaacaaataactctgtcctatctaacaaacggatgacatgttcaacaatattctt 6750536  T

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Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 66 - 239
Target Start/End: Complemental strand, 6648904 - 6648731
Alignment:
Q  66 ccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggat 165  Q
    |||||||||||||| ||||| |||||| |||||||||||||||  |||||||| ||||||||||| | ||||||||||| || || ||||||||| ||||    
T  6648904 ccccccattccccagatcccaagaagtgaaacatcttctgaatattggatgtttagtagcttagttgcagcttccacacgaggttgtacacccactggat 6648805  T
Q  166 gttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||| ||||| |||||||||||||||||||| ||| |||||| | |||||||||||||||||||||| ||||||    
T  6648804 gttcggcaacaaataactctgtcctatctagcaaatgggtgatatgttcaacaatattcttgatatctgcactt 6648731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 6500457 - 6500632
Alignment:
Q  57 ttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacac 156  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||| ||  || |  ||||| || |||||||| | ||||||||||| |||||||| ||    
T  6500457 ttgcccgtaccccccattccccatatccctagaattaagacatcttttgtgttttttatgtttagcagcttagtcgcagcttccacacgagattctaaac 6500556  T
Q  157 ccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatc 232  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  6500557 ccactggatgttcagcaacaaataactctgtcctatctagcaaacgggtgacgcgttgaacaatattcttgatatc 6500632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 55 - 238
Target Start/End: Original strand, 6624536 - 6624719
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| |||| |||||||||||||||||| |||| ||||||||||||||| || || ||||| || |||||||||||   ||| ||||||| |||||||||    
T  6624536 ttttacccacaccccccattccccatattcctaaaagtaaaacatcttcggagttttggatattgagtagcttagtcacagcatccacacgagattctac 6624635  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcact 238  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||  ||| |||||||||||||||||| |||||    
T  6624636 acccactggatgttcagcaacgaataattctgtcctatctagcaaacgggtcacgtgtttaacaatattcttgatatctgcact 6624719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 6535759 - 6535943
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||  || |||||||| | ||||||||| | ||||| ||||| |||||| |     
T  6535759 ttttgcctataccccccattccccatatccctagaagtaagacatcttctgcgttttggatgtttaatagcttagttgcagcttgcacacgagattcaat 6535858  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
     ||||| |||||||||||||| ||||||||| |||||||||| ||||| || ||| ||||||||| ||||||||||||| |||||    
T  6535859 tcccactggatgttcagcaacaaataactctttcctatctagcaaacgagtaacatgttcaacaacattcttgatatcatcactt 6535943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 55 - 226
Target Start/End: Complemental strand, 6725790 - 6725619
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| ||| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||| | ||||||||| | ||||| ||||| |  ||||||    
T  6725790 ttttacccgtaccccccataccccaaatccctagaagtaaaacatcttctgatttttggatgttcaatagcttagttgcagcttgcacacgatgttctac 6725691  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattctt 226  Q
     || || |||||||||||||||||||||||||||||||| || ||||| ||||||  |||||||||||||||    
T  6725690 tcctactggatgttcagcaacgaataactctgtcctatccagcaaacgagtgacatattcaacaatattctt 6725619  T

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Target: chr4; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 6548015 - 6548185
Alignment:
Q  69 cccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggatgtt 168  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||| || | |||||| || | ||||| ||||| ||||||||| ||||| |||||||    
T  6548015 cccattccccatatccctaaaagtaaaacatcttctgacttttggatctttaatagcttggttgcagcttgcacacgagattctactcccactggatgtt 6548114  T
Q  169 cagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    | ||||| ||||||| |||||||||||| ||||| || ||| |   ||||||| | |||| ||||||||||    
T  6548115 cggcaacaaataactgtgtcctatctagcaaacgagtaacatgactaacaatactgttgacatcagcactt 6548185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 6834025 - 6833853
Alignment:
Q  64 taccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccgg 163  Q
    |||||||||||||||||||||| |||||||||||||||   || || |  ||||| | ||||||| |   ||  ||||||| |||||||| |||||| ||    
T  6834025 taccccccattccccatatcccaagaagtaaaacatct---gatttttttatgtttaatagcttaatcacagtgtccacacgagattctaaacccactgg 6833929  T
Q  164 atgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||||||||||| ||||||| ||||||||| || ||| | ||||||||||||||||| || |||||||||||||||    
T  6833928 atgttcagcaacaaataactttgtcctatcaagcaaatgtgtgacacgttcaacaatgtttttgatatcagcactt 6833853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 6713671 - 6713487
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||||||||  |||||||||||||| ||||||| |||||||||||| | |||||| ||||| || ||||  |||||   | ||||||| | ||||   ||    
T  6713671 ttttgcccaagccccccattccccagatccctaaaagtaaaacatcatttgaattttggatatttagtaaattagtcacatcttccactcgagatctgac 6713572  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    ||| || |||| |||| |||| ||||| |||||| ||||||| |||||||||||| ||||||| |||||||||||||| ||||||    
T  6713571 accgactggatattcaacaacaaataagtctgtcttatctagcaaacgggtgacatgttcaactatattcttgatatctgcactt 6713487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 8412715 - 8412599
Alignment:
Q  91 gtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctacacccaccggatgttcagcaacgaataactctgtcct 190  Q
    ||||||||||||||||||| || ||||| ||||||| |||   || ||  |||| |||||||||||| || |||||||||||||| ||||||||||| ||    
T  8412715 gtaaaacatcttctgaattttgcatgtttagtagctcagtcacagattttacacgagattctacaccgactggatgttcagcaacaaataactctgtgct 8412616  T
Q  191 atctaggaaacgggtga 207  Q
    |||||| ||||||||||    
T  8412615 atctagcaaacgggtga 8412599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 12000 - 12184
Alignment:
Q  55 ttttgcccataccccccattccccatatccctagaagtaaaacatcttctgaattctggatgttaagtagcttagtggaagcttccacacaagattctac 154  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||| || | |||||| || |||||||| | | ||||||||| ||||||||     
T  12000 tttttcccataccccccattccccatatccctagaattaatacatcttctgagtttttgatgtttagcagcttagtcgcaacttccacacgagattctaa 12099  T
Q  155 acccaccggatgttcagcaacgaataactctgtcctatctaggaaacgggtgacacgttcaacaatattcttgatatcagcactt 239  Q
    |||||| |||||||||||||| ||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||    
T  12100 acccactggatgttcagcaacaaataactctgtcctaccaagcaaaccggtgacatgttcaacaatattcttgatatcagcactt 12184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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