View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_2 (Length: 605)
Name: NF9416_low_2
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 39732292 - 39732809
Alignment:
| Q |
12 |
ggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatg |
111 |
Q |
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| T |
39732292 |
ggtgttcgtgtcggagtccatgcttcataggtaatatgtaacttaaaggtccataagtcaatctggtaaacacggatgaatgatttacgatacggttatg |
39732391 |
T |
|
| Q |
112 |
tgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcaagacatatacaccaatcatgttcatgtacttctttagccattctac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732392 |
tgggcttattttggtatatggttcatgaacttcaaaatcatattcacaaactcatgacatatacaccaatcatgttcatgtacttctttagccattctac |
39732491 |
T |
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| Q |
212 |
attgctggactaagcatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcat |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732492 |
attgctggactaaacatctgcgggactactcttatttgttttacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcat |
39732591 |
T |
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| Q |
312 |
ttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaa |
411 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732592 |
ttatttttatgaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaa |
39732691 |
T |
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| Q |
412 |
ttgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttat |
511 |
Q |
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| T |
39732692 |
ttgaaagattttcttggaggaacgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatcccccgaatctattcatgatgtttat |
39732791 |
T |
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| Q |
512 |
ctttctatttcagttgac |
529 |
Q |
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| T |
39732792 |
ctttctatttcagttgac |
39732809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 525 - 589
Target Start/End: Original strand, 39732840 - 39732904
Alignment:
| Q |
525 |
ttgacccatgtagattctatctattggaggaagtgattttgttgtagttgttacattagttcctg |
589 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39732840 |
ttgagccatgtagattctatctattggaggaactgattttgttgtagttgttacattagttcctg |
39732904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 294 - 485
Target Start/End: Complemental strand, 37477029 - 37476844
Alignment:
| Q |
294 |
cttaattgctcttttcatttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccat |
393 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgg------agcctgtcgaggatccttcaccat |
37476936 |
T |
|
| Q |
394 |
ttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
485 |
Q |
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| |||||||||||||||||| | |||||| || ||| || |||||||| |||||||||||||| ||||||| | || ||||||||| |
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| T |
37476935 |
caagattcacatggagaattgacaacttttctagggtgaatttgaaaaagctctattcagatgtatttgttgttgggagttacaaatggtat |
37476844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 39868313 - 39868226
Alignment:
| Q |
398 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
485 |
Q |
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| T |
39868313 |
attcacatggagaattgggggattttcttcgataaatacaataaagctctattcagatgtatttgaagttgggggttacaaatggtat |
39868226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 589
Target Start/End: Complemental strand, 39901618 - 39901569
Alignment:
| Q |
540 |
tctatctattggaggaagtgattttgttgtagttgttacattagttcctg |
589 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
39901618 |
tctatctattgtaggaagtgattttgttgtagttgttattttagttcctg |
39901569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 39901787 - 39901700
Alignment:
| Q |
398 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtat |
485 |
Q |
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| T |
39901787 |
attcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtat |
39901700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Complemental strand, 39913702 - 39913661
Alignment:
| Q |
444 |
ctctgttcagatgtatttgatgttgggggctataaatggtat |
485 |
Q |
| |
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|||| ||||||||||||||| | ||||||||||||||||||| |
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| T |
39913702 |
ctctattcagatgtatttgaagctgggggctataaatggtat |
39913661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 540 - 588
Target Start/End: Complemental strand, 39868122 - 39868074
Alignment:
| Q |
540 |
tctatctattggaggaagtgattttgttgtagttgttacattagttcct |
588 |
Q |
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|||||||| ||| |||||| |||||||||||| ||||| |||||||||| |
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| T |
39868122 |
tctatctagtggcggaagtcattttgttgtagctgttatattagttcct |
39868074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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