View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9416_low_20 (Length: 303)

Name: NF9416_low_20
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9416_low_20
NF9416_low_20
[»] chr6 (14 HSPs)
chr6 (166-293)||(4254443-4254570)
chr6 (1-109)||(4254627-4254735)
chr6 (197-287)||(34187630-34187721)
chr6 (28-103)||(4257937-4258008)
chr6 (166-264)||(6197945-6198044)
chr6 (172-278)||(30465338-30465445)
chr6 (181-287)||(3807213-3807321)
chr6 (181-278)||(4408915-4409013)
chr6 (179-278)||(17957178-17957278)
chr6 (168-278)||(10313444-10313555)
chr6 (238-289)||(5644601-5644653)
chr6 (179-264)||(24672416-24672502)
chr6 (239-292)||(11458643-11458696)
chr6 (239-290)||(843984-844036)
[»] chr2 (8 HSPs)
chr2 (197-290)||(8794739-8794832)
chr2 (197-288)||(27694423-27694516)
chr2 (170-292)||(24490454-24490577)
chr2 (179-278)||(30640945-30641044)
chr2 (166-264)||(31994657-31994756)
chr2 (179-227)||(39293083-39293131)
chr2 (184-267)||(34904164-34904247)
chr2 (186-263)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (166-289)||(10467391-10467516)
chr8 (166-291)||(26938772-26938899)
chr8 (181-278)||(16483918-16484016)
chr8 (168-287)||(42023896-42024017)
chr8 (166-287)||(39344718-39344841)
chr8 (179-234)||(32797081-32797136)
chr8 (179-263)||(12597002-12597087)
chr8 (239-292)||(26938533-26938587)
chr8 (180-288)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (170-289)||(13009272-13009393)
chr7 (179-292)||(27567569-27567684)
chr7 (179-276)||(28098679-28098777)
chr7 (185-278)||(22485092-22485185)
chr7 (179-278)||(30851817-30851917)
chr7 (170-286)||(11297898-11298014)
chr7 (179-278)||(20132202-20132302)
chr7 (208-286)||(30851547-30851627)
chr7 (183-289)||(34471378-34471486)
chr7 (239-286)||(25411457-25411505)
chr7 (179-267)||(28564981-28565069)
chr7 (180-248)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (180-292)||(40391038-40391152)
chr4 (179-289)||(15025924-15026036)
chr4 (168-290)||(38377932-38378055)
chr4 (179-225)||(10574082-10574128)
chr4 (238-287)||(31049885-31049935)
chr4 (215-263)||(6449606-6449655)
chr4 (215-289)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (179-291)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (170-291)||(39340908-39341032)
chr3 (170-267)||(44446783-44446881)
chr3 (183-289)||(34359483-34359592)
chr3 (180-290)||(20315035-20315147)
chr3 (170-233)||(28769472-28769535)
chr3 (184-288)||(54783217-54783322)
chr3 (166-228)||(41544536-41544598)
chr3 (242-291)||(44648251-44648301)
chr3 (179-288)||(50334542-50334653)
[»] chr5 (13 HSPs)
chr5 (179-268)||(19343700-19343790)
chr5 (166-290)||(38948658-38948783)
chr5 (170-288)||(5459047-5459167)
chr5 (170-233)||(26724251-26724314)
chr5 (170-266)||(16089824-16089921)
chr5 (215-290)||(22860871-22860948)
chr5 (184-286)||(1298845-1298951)
chr5 (172-288)||(3746826-3746943)
chr5 (205-289)||(35270847-35270932)
chr5 (181-288)||(39057091-39057200)
chr5 (183-290)||(15070070-15070180)
chr5 (215-291)||(35529755-35529832)
chr5 (179-229)||(36235902-36235952)
[»] chr1 (5 HSPs)
chr1 (179-278)||(16545330-16545430)
chr1 (180-290)||(33752867-33752979)
chr1 (188-291)||(23230789-23230894)
chr1 (183-264)||(3891594-3891676)
chr1 (179-287)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (183-289)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (170-264)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (197-278)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 166 - 293
Target Start/End: Complemental strand, 4254570 - 4254443
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4254570 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaataaggattaaaagtaaataaaattttgtgaagactaaacttaaaagcttgtaatttta 4254471  T
Q  266 tatggactaaaaaatatttaaccctatg 293  Q
    || ||| |||||||||||||||||||||    
T  4254470 tacggattaaaaaatatttaaccctatg 4254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4254735 - 4254627
Alignment:
Q  1 tggtcactaccatgaaacctgttgcccctgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggt 100  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254735 tggtcactaccatgaaacttgttgcccccgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggt 4254636  T
Q  101 ttagtcctc 109  Q
    |||||||||    
T  4254635 ttagtcctc 4254627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 34187630 - 34187721
Alignment:
Q  197 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 287  Q
    ||||||| |||||||||| ||||| |||||||| |||||| ||||||||||| |||  |||||||||| || |||||||||| |||||||||    
T  34187630 taaaatgcaaatagggatgaaaagagaataaaaatttgtggagactaaacttaaaaatttgtaattttgtagggactaaaaacatatttaac 34187721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 4258008 - 4257937
Alignment:
Q  28 ctgatgatgaagctgttccagtatttacttacatactacatactggaacaatatttcactcttagactatggttta 103  Q
    ||||||||||||||||| |||||||||     ||||||||||||| |||||||||| |||||||||||||||||||    
T  4258008 ctgatgatgaagctgttacagtatttat----atactacatactgcaacaatattttactcttagactatggttta 4257937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 6197945 - 6198044
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||| |||  ||||||||||||| |||| ||   ||||||||||||| ||||||||||||    
T  6197945 ggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataaacttttcgtagggactaaacttgaaggcttgtaatttt 6198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 30465445 - 30465338
Alignment:
Q  172 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatgg 270  Q
    |||||| |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| ||    
T  30465445 ttttaatcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataagg 30465346  T
Q  271 actaaaaa 278  Q
    ||||||||    
T  30465345 actaaaaa 30465338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 3807213 - 3807321
Alignment:
Q  181 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag--actaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||||||||| ||||||||||| | |||  ||||||||||||| |||| || ||  |||||||||||||| |||||||||| || | ||||||||    
T  3807213 tccaaaatagtccttataaaatgaaaacaaggaccaaaagtgaataaactttt-tgtaggaactaaacttgaaagtttgtaattttttaggaactaaaaa 3807311  T
Q  279 -atatttaac 287  Q
     |||||||||    
T  3807312 catatttaac 3807321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 4409013 - 4408915
Alignment:
Q  181 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||||||| | ||||||| ||||||| | ||||||||||| |||||||||| | || ||||||| |||| ||||||||||| |  |||||||||    
T  4409013 tccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttacagagactaaaaa 4408915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 17957178 - 17957278
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||| | | |||||||  |||||||||||||||||||| | |||||||    
T  17957178 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttataaggactaaatgtgaaagcttgtaattttataagaactaaaa 17957277  T
Q  278 a 278  Q
    |    
T  17957278 a 17957278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 10313444 - 10313555
Alignment:
Q  168 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattt-tgtgaagactaaacttgaaagcttgtaattttat 266  Q
    |||||||||  ||||||||||||||| | ||||||| ||||| ||| ||||| | |||||  ||| |||  ||||||||||| ||||||||||||||| |    
T  10313444 acacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgt 10313543  T
Q  267 atggactaaaaa 278  Q
    | | ||||||||    
T  10313544 aagaactaaaaa 10313555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 5644653 - 5644601
Alignment:
Q  238 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 289  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  5644653 agactaaacttgaaaatttgtaattttataaggactaaaaacatatttaaccc 5644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 24672416 - 24672502
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    ||||||||||||||| | ||| ||| |||||||||  || ||||||||||| ||||||   ||||||||| ||||| ||||||||||    
T  24672416 cctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaaatttttgtagggactaaactagaaagtttgtaatttt 24672502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 11458696 - 11458643
Alignment:
Q  239 gactaaacttgaaagcttgtaattttatatggactaaaaaatatttaaccctat 292  Q
    ||||||||| |||| ||||||||||| || ||||||||| |||||||| |||||    
T  11458696 gactaaactcgaaaacttgtaattttgtagggactaaaatatatttaatcctat 11458643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 844036 - 843984
Alignment:
Q  239 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 290  Q
    ||||||||||||||| | | | |||||||||||||||||| ||||||||||||    
T  844036 gactaaacttgaaaggtcgcacttttatatggactaaaaacatatttaaccct 843984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 197 - 290
Target Start/End: Original strand, 8794739 - 8794832
Alignment:
Q  197 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 290  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8794739 taaaatgcaaatagggactaaaagtgaataaaatttt-tgtagactaaacttgaaagcttgcaattttatagggactaaaaacatatttaaccct 8794832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 27694516 - 27694423
Alignment:
Q  197 taaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacc 288  Q
    |||||||  ||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  27694516 taaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaaaatttgtaattttatagggactaaaaacatatttaacc 27694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 24490577 - 24490454
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 269  Q
    |||||||  |||| |||||||||  | ||||||| ||||||||| |||||||||||||  |||| | |  ||||||||| |||||||||||||||| | |    
T  24490577 acttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtgaataattttttttaagaactaaacttaaaagcttgtaattttacagg 24490478  T
Q  270 gactaaaaa-atatttaaccctat 292  Q
     ||||||||  |||||||||||||    
T  24490477 aactaaaaacgtatttaaccctat 24490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 30641044 - 30640945
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  ||    ||| |||||||||||||||| ||||| ||| ||| ||||||    
T  30641044 cctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaaacatttccgagattaaacttgaaagcttgaaatttaatagggattaaaaa 30640945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 31994756 - 31994657
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||| |||||||||| ||||||||  ||||||  ||| || |||| |||||||||||||||    
T  31994756 ggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataaattttttgtagagattatacttaaaagcttgtaatttt 31994657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 39293131 - 39293083
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa 227  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  39293131 cctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataa 39293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 34904164 - 34904247
Alignment:
Q  184 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttata 267  Q
    |||||||||||| ||||||| ||||||||| |||| |  |||||  |||| ||| | ||||||||||||||||||||||||||||    
T  34904164 aaaatagtccttttaaaatgcaaatagggactaaatgcaaataagttttt-tgatggactaaacttgaaagcttgtaattttata 34904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 29242573 - 29242495
Alignment:
Q  186 aatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 263  Q
    |||||||| | ||||||| ||||||||  |||||||||||||  |||| || | |||||||||| ||||||||||||||    
T  29242573 aatagtccctataaaatgcaaataggggctaaaagtgaataatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 10467516 - 10467391
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||||||| ||||| ||||||||  |||||| | ||||||||||||||||||||||||||    
T  10467516 ggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttgaaagcttgtaatttt 10467417  T
Q  265 atatggac-taaaaaatatttaaccc 289  Q
     || |||| ||||| |||||||||||    
T  10467416 ttagggacttaaaatatatttaaccc 10467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 26938899 - 26938772
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||||| ||||||||||||||  ||||||   |||||||| | |||||||||||||||    
T  26938899 ggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaattttttgtagggactaaacataaaagcttgtaatttt 26938800  T
Q  265 atatggactaaaaa-atatttaacccta 291  Q
     || |||||||||| |||||||||||||    
T  26938799 gtagggactaaaaacatatttaacccta 26938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 278
Target Start/End: Original strand, 16483918 - 16484016
Alignment:
Q  181 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||   ||| ||||||||||||| |||||||||||||| ||||||||||    
T  16483918 tccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaatttttataaggactaaacttgaaaacttgtaattttatagggactaaaaa 16484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 42024017 - 42023896
Alignment:
Q  168 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttat 266  Q
    |||||||||  ||||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||   | | |||||||||||||| |||||||||| |    
T  42024017 acacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagtttgtaattttgt 42023918  T
Q  267 atggactaaaaa-atatttaac 287  Q
    | |||||||||| |||||||||    
T  42023917 agggactaaaaacatatttaac 42023896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 287
Target Start/End: Original strand, 39344718 - 39344841
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||||||||  |||| |  |||| |||||| |||||||||||||||    
T  39344718 ggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtgaataaattttttctagagaccaaacttaaaagcttgtaatttt 39344817  T
Q  265 atatggactaaaaa-atatttaac 287  Q
      | |||||||||| |||||||||    
T  39344818 gcagggactaaaaacatatttaac 39344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 32797081 - 32797136
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttg 234  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  32797081 cctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaattttg 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 263
Target Start/End: Original strand, 12597002 - 12597087
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattt 263  Q
    ||||||||||||||| | ||||||| ||||||||| |||| |||||| |||| |||||   ||||| |||||||||||||||||||    
T  12597002 cctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataaaaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 26938587 - 26938533
Alignment:
Q  239 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccctat 292  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||||||||    
T  26938587 gactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaaccctat 26938533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 288
Target Start/End: Complemental strand, 35055049 - 35054939
Alignment:
Q  180 ctccaaaatagtccttgtaaaa-tgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggact-aaaa 277  Q
    |||||||||||||| | ||||| || || || ||| ||||| |||||||| ||||||    ||||||||||||| ||||||||||| || ||||| ||||    
T  35055049 ctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaatttttgtaggaactaaacttgaaaacttgtaattttgtaaggactgaaaa 35054950  T
Q  278 aatatttaacc 288  Q
     ||||||||||    
T  35054949 catatttaacc 35054939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 289
Target Start/End: Complemental strand, 13009393 - 13009272
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatat 268  Q
    |||||||  |||||||| |||||| ||||||||| |||||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||||||||     
T  13009393 acttttagtcctccaaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttatag 13009294  T
Q  269 ggactaaaaa-atatttaaccc 289  Q
    |||||||||| |||||||||||    
T  13009293 ggactaaaaatatatttaaccc 13009272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 27567684 - 27567569
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||| |   |||||||||||||| ||||||||||| || ||  |||||    
T  27567684 cctccaaaatagtccttataaaatgcaaatatggattaaaagtgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtaggggttaaaa 27567585  T
Q  278 a-atatttaaccctat 292  Q
    | ||||||||||||||    
T  27567584 acatatttaaccctat 27567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 28098679 - 28098777
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa 276  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||| |||||   |||||| || ||||||||| ||| |||||||||||||| | ||||||    
T  28098679 cctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaaaaccttgtaattttataggaactaaa 28098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 22485185 - 22485092
Alignment:
Q  185 aaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| | |||| ||||||||  | ||||||||||    
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaatttgtacggactaaacttaagagctggtaattttggagggactaaaaa 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 30851917 - 30851817
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| |||||||||    
T  30851917 cctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataaggactaaaa 30851818  T
Q  278 a 278  Q
    |    
T  30851817 a 30851817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 11297898 - 11298014
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 269  Q
    |||||||  ||||||||||||||| | ||||||  |||||||||  ||||||||  ||||  ||  || ||||||||||||||||||||||||| ||| |    
T  11297898 acttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataaaaaaattccga-gactaaacttgaaagcttgtaatttaatagg 11297996  T
Q  270 gactaaaaa-atatttaa 286  Q
    || |||||| ||||||||    
T  11297997 gattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 20132202 - 20132302
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||||| |  ||||||  | |||||||||||||||||| | |||||||    
T  20132202 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttgtaagaactaaatgtcaaagcttgtaattttataggaactaaaa 20132301  T
Q  278 a 278  Q
    |    
T  20132302 a 20132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 30851627 - 30851547
Alignment:
Q  208 tagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 286  Q
    |||||| ||||||||||||||  |||| |  |||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  30851627 tagggactaaaagtgaataaatgttttatagagactaaacttgaaaatttgtaattttataaggactaaaaacatatttaa 30851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 34471378 - 34471486
Alignment:
Q  183 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaata-aaattttgtgaagactaaacttgaaagcttgtaattttatatggacta-aaaaat 280  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||| |  ||||||  ||| ||||||| ||||||| ||||||| || |||||| ||| ||    
T  34471378 caaaatagtctctataaaatgcaaatagggactaaaagtgaatacattttttgtagagattaaactttaaagcttataattttgtaaggactagaaacat 34471477  T
Q  281 atttaaccc 289  Q
    |||||||||    
T  34471478 atttaaccc 34471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 25411505 - 25411457
Alignment:
Q  239 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 286  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  25411505 gactaaacttgaaagcttctaattttacagggactaaaaacatatttaa 25411457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 28565069 - 28564981
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 267  Q
    ||||||||||||| | | ||||||  ||||||| ||||||||| ||||||  ||||| ||||||||| || |||  || ||||||||||    
T  28565069 cctccaaaatagttcatataaaatacaaataggaattaaaagtaaataaatctttgtaaagactaaatttaaaaatttataattttata 28564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 33991965 - 33992033
Alignment:
Q  180 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaactt 248  Q
    |||||||||| ||||| ||||||  ||||||||| |||| ||||||||||  || || |||||||||||    
T  33991965 ctccaaaatattccttataaaatacaaatagggactaaacgtgaataaaaaattttggagactaaactt 33992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 40391038 - 40391152
Alignment:
Q  180 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||   |||||||||| ||| |||||||||||||| ||||||||||    
T  40391038 ctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaa 40391137  T
Q  279 -atatttaaccctat 292  Q
     ||||||||||||||    
T  40391138 catatttaaccctat 40391152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 15025924 - 15026036
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    ||||||||||||||||| ||||||  ||||||||| ||||| ||||||||| ||||||   |||||||||| |||| |||||||||| ||  ||||||||    
T  15025924 cctccaaaatagtccttataaaatataaatagggactaaaaatgaataaaatttttgtagggactaaacttaaaagtttgtaattttgtagtgactaaaa 15026023  T
Q  278 a-atatttaaccc 289  Q
    | |||||||||||    
T  15026024 acatatttaaccc 15026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 38377932 - 38378055
Alignment:
Q  168 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 267  Q
    |||||||||  ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  || | | ||||||| |||||| ||||| ||||| ||    
T  38377932 acacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataaaaaattttaaggactaaatttgaaaacttgttattttgta 38378031  T
Q  268 tggac-taaaaaatatttaaccct 290  Q
     | || ||||| ||||||||||||    
T  38378032 agaacttaaaacatatttaaccct 38378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 10574082 - 10574128
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat 225  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  10574082 cctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 31049935 - 31049885
Alignment:
Q  238 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 287  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  31049935 agactaaacttgaaagtttgtaattttgtaaggactaaaaacatatttaac 31049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 6449655 - 6449606
Alignment:
Q  215 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 263  Q
    |||||||||||||| |||| || | |||||||||||||||||||||||||    
T  6449655 taaaagtgaataaattttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 48282889 - 48282965
Alignment:
Q  215 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 289  Q
    |||||||||||||| |||| ||   |||||||||||||||||| ||||| | || |||||||||| |||||||||||    
T  48282889 taaaagtgaataaattttttgtagggactaaacttgaaagcttttaattgtgtacggactaaaaatatatttaaccc 48282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 16943 - 16830
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    |||| |||||||||| | ||||||  ||||||||| ||||||||||||||| ||||  | ||||||||||||||| | ||||||||||| ||||||||||    
T  16943 cctctaaaatagtccctataaaatacaaatagggactaaaagtgaataaaaatttggtaggactaaacttgaaagttggtaattttatagggactaaaaa 16844  T
Q  279 -atatttaacccta 291  Q
     |||||||||||||    
T  16843 catatttaacccta 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 291
Target Start/End: Original strand, 39340908 - 39341032
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttata 267  Q
    |||||||  |||||||||||||| || ||||||||||||||  | |||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  39340908 acttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataattttttttgtagagactaaacttgaaagcttgtaattttata 39341007  T
Q  268 tggactaaaaa-atatttaacccta 291  Q
     ||| |||||| |||||||||||||    
T  39341008 gggattaaaaacatatttaacccta 39341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 44446881 - 44446783
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttata 267  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||    
T  44446881 acttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaattttgtaagaactaaacgtgaaagcttgtaattttata 44446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 34359483 - 34359592
Alignment:
Q  183 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaa-ttttatatggactaaaaa-a 279  Q
    ||||| ||||| | ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||||||||||| ||||||| |||||||||| |    
T  34359483 caaaaaagtccctataaaatgtaaataggaattaaaagtgaataaaatttttgtagggactaaacttgaaagcttgtaatttttatagggactaaaaaca 34359582  T
Q  280 tatttaaccc 289  Q
    ||||||||||    
T  34359583 tatttaaccc 34359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 20315035 - 20315147
Alignment:
Q  180 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||||| |||| | ||||||| ||||||||| ||||||||||||||  |||| |  |||||||||||||||| |||||||||| ||  |||||||||    
T  20315035 ctccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaattttttatagagactaaacttgaaagtttgtaattttgtagtgactaaaaa 20315134  T
Q  279 -atatttaaccct 290  Q
     ||||||||||||    
T  20315135 catatttaaccct 20315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 28769535 - 28769472
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 233  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||    
T  28769535 acttttaatcctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttt 28769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 54783217 - 54783322
Alignment:
Q  184 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atat 282  Q
    |||||||||| ||||||||  ||||| ||||||||||  ||| |||  |||| | ||||| |||| ||||||||||||||| || |||||||||| ||||    
T  54783217 aaaatagtccctgtaaaattcaaataaggattaaaagcaaattaaaaattgtaaggactacacttaaaagcttgtaattttgtaaggactaaaaacatat 54783316  T
Q  283 ttaacc 288  Q
    ||||||    
T  54783317 ttaacc 54783322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 41544598 - 41544536
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa 228  Q
    |||||||||||| | ||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  41544598 ggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaa 41544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 44648251 - 44648301
Alignment:
Q  242 taaacttgaaagcttgtaattttatatggact-aaaaaatatttaacccta 291  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  44648251 taaacttgaaagtttgtaattttatagggactaaaaaaatatttaacccta 44648301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 50334653 - 50334542
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    |||| |||||||||| | ||||||| ||||||| | ||||||||||||||  ||||||   ||||||| |||||| ||| |||||||| | ||| |||||    
T  50334653 cctctaaaatagtccctataaaatgcaaataggaactaaaagtgaataaattttttgtagggactaaatttgaaaacttataattttagaaggattaaaa 50334554  T
Q  278 a-atatttaacc 288  Q
    | ||||||||||    
T  50334553 acatatttaacc 50334542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 19343700 - 19343790
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttatat 268  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||| || ||   ||||||||||||||||||||||||||||    
T  19343700 cctccaaactagtccttataaaatgcaaatagggactaaaagtgaataaattttt-tgcagggcctaaacttgaaagcttgtaattttatat 19343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 38948658 - 38948783
Alignment:
Q  166 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 265  Q
    |||||||||||  || || ||||||||| | ||||||  |||||||||  ||||||||||||  ||||||  ||||||||||||||| |||||||||||     
T  38948658 ggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataatgttttgtatagactaaacttgaaaacttgtaattttg 38948757  T
Q  266 tatggactaaaaa-atatttaaccct 290  Q
    ||   |||||||| ||||||||||||    
T  38948758 tagaaactaaaaacatatttaaccct 38948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 288
Target Start/End: Complemental strand, 5459167 - 5459047
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatat 268  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||||   |||||||||| ||| ||| ||||||||||     
T  5459167 acttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttatag 5459068  T
Q  269 ggactaaaaa-atatttaacc 288  Q
     ||||||||| ||||||||||    
T  5459067 agactaaaaacatatttaacc 5459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 26724251 - 26724314
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 233  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  26724251 acttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaattttt 26724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 16089824 - 16089921
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttat 266  Q
    |||||||  |||| |||||||||| | ||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |||||| ||||||||||||    
T  16089824 acttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgtaattttat 16089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 22860948 - 22860871
Alignment:
Q  215 taaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 290  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||||||||| || |||||||||| | ||||||||||    
T  22860948 taaaagtgaataaaagttttgtaaaaactaaactttaaagcttgtaattttgtagggactaaaaacacatttaaccct 22860871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 1298845 - 1298951
Alignment:
Q  184 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa---attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-a 279  Q
    |||||||||| | ||||||| ||||||||| ||||||||||||||    ||||||   ||||||| || ||||||||||||||| || |||||||||| |    
T  1298845 aaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaaca 1298944  T
Q  280 tatttaa 286  Q
    |||||||    
T  1298945 tatttaa 1298951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 3746826 - 3746943
Alignment:
Q  172 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatgga 271  Q
    |||||| ||||||||| ||||| | ||||||| |||||  ||||| ||||||||||| ||||||  ||||||||||| ||   || ||| ||| |||| |    
T  3746826 ttttaatcctccaaaacagtccctataaaatgtaaatatagattataagtgaataaatttttgtagagactaaacttaaatagttataactttgtatgaa 3746925  T
Q  272 ctaaaaa-atatttaacc 288  Q
    ||||||| ||||||||||    
T  3746926 ctaaaaacatatttaacc 3746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 35270847 - 35270932
Alignment:
Q  205 aaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa-aaatatttaaccc 289  Q
    |||||||||||||||||||||||| |||| |   ||||||||||||||| || ||||||| || | |||||| | |||||||||||    
T  35270847 aaatagggattaaaagtgaataaatttttatagggactaaacttgaaagtttttaattttgtaggaactaaagacatatttaaccc 35270932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 39057200 - 39057091
Alignment:
Q  181 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa- 278  Q
    |||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||  |||| |||||| |||  |||||||||| ||  |||||||||     
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgtagagactaaaaat 39057101  T
Q  279 atatttaacc 288  Q
    ||||||||||    
T  39057100 atatttaacc 39057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 15070070 - 15070180
Alignment:
Q  183 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaa--gactaaacttgaaagcttgtaattttatatggactaaaaa-a 279  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||||| |||| || |  |||||||||| |||  |||||||||| ||  ||||||||| |    
T  15070070 caaaatagtctctataaaatgtaaatagggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaattttttagagactaaaaata 15070169  T
Q  280 tatttaaccct 290  Q
    |||||| ||||    
T  15070170 tatttatccct 15070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 35529755 - 35529832
Alignment:
Q  215 taaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacccta 291  Q
    ||||||||||||||||||| ||| | |||||||||||||  | || |||||||| |||||||||| |||||||||||||    
T  35529755 taaaagtgaataaaatttt-tgagggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacccta 35529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 36235902 - 36235952
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa 229  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  36235902 cctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaa 36235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 16545430 - 16545330
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaa 277  Q
    |||||||||||||||||  |||||| |||| || | |||||||||||||| |||| ||  ||||||||||| ||| |||||||||||||| |||||||||    
T  16545430 cctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataaattttttgtacagactaaacttaaaaacttgtaattttatagggactaaaa 16545331  T
Q  278 a 278  Q
    |    
T  16545330 a 16545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 33752979 - 33752867
Alignment:
Q  180 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatt-ttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    |||||||||||||| | ||||||| ||||| ||| |||||||||||||||   ||||   || |||||| ||||||||||||||||||| ||||||||||    
T  33752979 ctccaaaatagtccctataaaatgtaaataaggactaaaagtgaataaaaaaattgtagggattaaactggaaagcttgtaattttatagggactaaaaa 33752880  T
Q  279 -atatttaaccct 290  Q
     ||||||||||||    
T  33752879 catatttaaccct 33752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 23230894 - 23230789
Alignment:
Q  188 tagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atattta 285  Q
    |||||||| ||||||| | |||| || ||||||||||| ||||||||||   ||||||||||| ||  |||||||||| ||  ||||||||| |||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgtagagactaaaaacatattta 23230795  T
Q  286 acccta 291  Q
    ||||||    
T  23230794 acccta 23230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 3891594 - 3891676
Alignment:
Q  183 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaat-tttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    ||||||||||  | ||||||  ||||||||||||||||| ||||||||  ||||  ||| ||||||||||| |||||||||||    
T  3891594 caaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 29307622 - 29307512
Alignment:
Q  179 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggac-taaa 276  Q
    ||||||||||||||| | ||||||| ||||||||| ||| ||| ||| |||| |||||   ||||||||||  ||  ||||||||||||| |||| ||||    
T  29307622 cctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaacttttaaaattgtaattttatagggacttaaa 29307523  T
Q  277 aaatatttaac 287  Q
    | |||||||||    
T  29307522 acatatttaac 29307512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 152186 - 152078
Alignment:
Q  183 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-at 280  Q
    ||||||||||  | ||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||| |||| | ||||||| || |||||||||| ||    
T  152186 caaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgtagggactaaaaacat 152087  T
Q  281 atttaaccc 289  Q
    |||||||||    
T  152086 atttaaccc 152078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 253775 - 253680
Alignment:
Q  170 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaatttt 264  Q
    |||||||| ||||||||||||||| | ||||||| | |||| |||||||| |||||||   ||||||  |||||||| || |||||||||||||||    
T  253775 acttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgtaatttt 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 7495 - 7414
Alignment:
Q  197 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 278  Q
    ||||||| ||||||||| ||||| |||||||||  || |  ||| |||||||||||||||||||||| ||| ||| ||||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattttcgagattaaacttgaaagcttgtaatttaatagggattaaaaa 7414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University