View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_24 (Length: 291)
Name: NF9416_low_24
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45207286 - 45207013
Alignment:
| Q |
1 |
atgaattatttacaagctttttcgataaagatctaagaccccccatatttgactctatccaatttagcctccgcaataccacttttttgtgttaactaag |
100 |
Q |
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| T |
45207286 |
atgaattatttacaagctttttcgataaagatctaagaccccccatatttaactctatccaatttagcctccgcaataccacttttttgtgttaactcag |
45207187 |
T |
|
| Q |
101 |
gagaaaggtccgaagtttgtaagaaaagtttcgccaagaattgtttcaccaggaatcaaactcaagttatcctgaacactaacaattcgtctttggtaaa |
200 |
Q |
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| T |
45207186 |
gagaaaggtccggagtttgtaagaaaagtttcgccaagaattgtttcaccaggaatcaaactcaagttatcctgaacactaacaattcgtttttggtaaa |
45207087 |
T |
|
| Q |
201 |
gcgtattaaccacttgagtccaattgcttggatggtgcaatatccctttaaaactactagtggtggtagtaaat |
274 |
Q |
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| T |
45207086 |
gcgtattaaccacttgagtccaattgcttggatggtgcaatatccctttaaaactactagtggtggtagtaaat |
45207013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 25296828 - 25296873
Alignment:
| Q |
133 |
gccaagaattgtttcacc-aggaatcaaactcaagttatcctgaac |
177 |
Q |
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| T |
25296828 |
gccaagaattgttccaccgaggaatcaaactcaagttctcctgaac |
25296873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 2578240 - 2578285
Alignment:
| Q |
185 |
attcgtctttggtaaagcgtattaaccacttgagtccaattgcttg |
230 |
Q |
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| T |
2578240 |
attcgtcatttgtaaagctcattaaccacttgagtccaattgcttg |
2578285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 26400612 - 26400641
Alignment:
| Q |
135 |
caagaattgtttcaccaggaatcaaactca |
164 |
Q |
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| T |
26400612 |
caagaattgtttcaccaggaatcaaactca |
26400641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 28562142 - 28562194
Alignment:
| Q |
181 |
aacaattcgtctttggtaaagcgtattaaccacttgagtccaattgcttggat |
233 |
Q |
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| T |
28562142 |
aacaattcgtcattggtggagctcattaaccacttgagtccaattacttggat |
28562194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 25517078 - 25517035
Alignment:
| Q |
135 |
caagaattgtttca--ccaggaatcaaactcaagttatcctgaa |
176 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
25517078 |
caagaattgtttcaatccaggaatcaaactcaagttctcctgaa |
25517035 |
T |
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