View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_27 (Length: 281)
Name: NF9416_low_27
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3213539 - 3213800
Alignment:
| Q |
1 |
ggtgaacaaggtggaataatggaaccttgattcatcgaaaagaacatctttggaaataaaaatgcgaccacttgtaacatttatgagaagaaaaatagcg |
100 |
Q |
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| T |
3213539 |
ggtgaacaaggtggaataatggaaccttgattcatcgagaagaacatctttggaaataaaaatgcgaccacttgtaacatttatgagaagaagaatagcg |
3213638 |
T |
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| Q |
101 |
cagaaaaatacattcatgggatctaaaatcaagtttatgagcattttagggtctaagtaacggaaaacaagcacaaccaaagacttttacgaagttataa |
200 |
Q |
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| T |
3213639 |
cagaaaaatacattcatgggatctaaaatcaagtttatgagcattttagggtctaagtaacggaaaacaagcacaaccaaagacttttaagaagttataa |
3213738 |
T |
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| Q |
201 |
tcaggtttttgatggaataagacttgatgaggaattttaaattgaagtgagccagtactagg |
262 |
Q |
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| T |
3213739 |
tcaggtttttgatggaataagacttgatgaggaattttaaattgaagtgagccagtactagg |
3213800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 39581025 - 39580847
Alignment:
| Q |
69 |
cacttgtaacatttatgagaagaaaaatagcgcagaaaaatacattcatgggatctaaaatcaagtttatgagcattttagggtctaagtaacggaaaac |
168 |
Q |
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| T |
39581025 |
cacttgtaacctttatgagaaggagaataacccaaaaaaatgcactcatgagatctgaagtcaagtttatgagcattataaggtctaagtaaagggaaac |
39580926 |
T |
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| Q |
169 |
aagcacaaccaaagacttttacgaagttataatcaggtttttgatggaataagacttgatgaggaattttaaattgaag |
247 |
Q |
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| T |
39580925 |
aagcacaaccaaagacttttaggaaattataatcaggttgttggtgaaataagacttgatgagggattttaaattgaag |
39580847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 20029065 - 20028953
Alignment:
| Q |
114 |
tcatgggatctaaaatcaagtttatgagcattttagggtctaagtaacggaaaacaagcacaaccaaagacttttacgaagttataatcaggtttttgat |
213 |
Q |
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||||| ||||||||||||| || |||||||| ||||| || | ||| || ||||||||||||||||| || |||| || ||||||| |||||||||| |
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| T |
20029065 |
tcatgagatctaaaatcaaacttgtgagcattatagggcctgaataaagggaaacaagcacaaccaaaaacctttaaaaaattataattgggtttttgat |
20028966 |
T |
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| Q |
214 |
ggaataagacttg |
226 |
Q |
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|| |||| ||||| |
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| T |
20028965 |
ggtataaaacttg |
20028953 |
T |
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