View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_3 (Length: 561)
Name: NF9416_low_3
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 180 - 496
Target Start/End: Complemental strand, 22493974 - 22493658
Alignment:
| Q |
180 |
tacaaagcaagagacctaagggaaacggtaatttagaagcccaaaactatctctaaaaacgtattccctaataaaagaaggtaaatagttccaccaaaag |
279 |
Q |
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| T |
22493974 |
tacaaagcaagagacctaagggaaacggtaatttagaagcccaaaactatctctaaaaacgtattccctaataaaagaaggtaaatagttccaccaaaag |
22493875 |
T |
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| Q |
280 |
acatttgcactttcgtgtccatgatttgcaagcttgtacgcacaatagttgccctcacgaaaaatatacaaagaaagaatagaaagaccgccctacatac |
379 |
Q |
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| T |
22493874 |
acatttgcagttccgtgtatatgatttgcaagcttgtacgcacaatagttgccctcacgaaaaatatacgaagaaagaatcgaaagaccgccctccatac |
22493775 |
T |
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| Q |
380 |
aattatgccacctaacatctttgaaggtaattcgggattccgaatttccaattccttgaataatccaatnnnnnnntcttcattgaggaatagcactcat |
479 |
Q |
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| T |
22493774 |
aattatgccacctaacatctttgaaggtaatttgggattccgaatttccaattccttgaataatccaataaaaaaatcttcattgaggaagaccactcat |
22493675 |
T |
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| Q |
480 |
tgaacgagtattatacc |
496 |
Q |
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| T |
22493674 |
tgaacgagtattatacc |
22493658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 231 - 435
Target Start/End: Complemental strand, 22983903 - 22983699
Alignment:
| Q |
231 |
tctaaaaacgtattccctaataaaagaaggtaaatagttccaccaaaagacatttgcactttcgtgtccatgatttgcaagcttgtacgcacaatagttg |
330 |
Q |
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| T |
22983903 |
tctaaaaaagtcttccgtaataaaagagggtaaagagttccacaaaagaacatttgcagatctgtgtccatgacttgcaagcttgtctgcacatcagctg |
22983804 |
T |
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| Q |
331 |
ccctcacgaaaaatatacaaagaaagaatagaaagaccgccctacatacaattatgccacctaacatctttgaaggtaattcgggattccgaatttccaa |
430 |
Q |
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| T |
22983803 |
ccctcgtagaatataggcgaagaaagaatcgaaagaccacactgcatacaattgtgccacctaacatctttgaaggcaacttgggctttcaaatttccaa |
22983704 |
T |
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| Q |
431 |
ttcct |
435 |
Q |
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||||| |
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| T |
22983703 |
ttcct |
22983699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 22494142 - 22494047
Alignment:
| Q |
12 |
aagcataggatgacaacaggagggaacttaacatccagctaggttggcaccccaagagcatcaaatcctctaccatctctctcagaaaattttatt |
107 |
Q |
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| T |
22494142 |
aagcaaaggatgacaacaggagggaacttaacatccaactaggttggcactccaaaagcaccaaatcctataccaactacctcagaaaaatttatt |
22494047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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