View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9416_low_33 (Length: 255)
Name: NF9416_low_33
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 44512689 - 44512503
Alignment:
| Q |
59 |
attgtactgattctgtaatgaacaacttttgggttgttcctaaatgagagatatcatactctaaaaaggactaaaattacaactatattattctaacata |
158 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
44512689 |
attgtactaattctgtaatgaacaacttttgagttgttcctatatgagagatatcatactctaaaaaggacaaaaattacgactatattattctaacata |
44512590 |
T |
|
| Q |
159 |
attaaatttttcatttattcatttgataatcataataatgataaatcacttatttataaccttgatattataataacttcacctatg |
245 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44512589 |
attaaatttttcattcattcatttgataatcataacaatgataaatcacttatttataaccttgatattataataacttcacctatg |
44512503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 45134613 - 45134665
Alignment:
| Q |
72 |
tgtaatgaacaacttttgggttgttcctaaatgagagatatcatactctaaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| || ||| ||||||| |
|
|
| T |
45134613 |
tgtaatgaacaacttttgggttgtttataaatgagagagataatattctaaaa |
45134665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 37860305 - 37860350
Alignment:
| Q |
136 |
tacaactatattattctaacataattaaatttttcatttattcatt |
181 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||| ||||||| |
|
|
| T |
37860305 |
tacaactatatcattctaacataactaaattcttcattcattcatt |
37860350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 56329328 - 56329237
Alignment:
| Q |
126 |
ggactaaaa-ttacaactatattattctaacataattaaatttttcatttattcatttgataatcataataatgataaatcacttatttata |
216 |
Q |
| |
|
||||||||| ||||||||| | |||| ||||||||||| ||| | |||| |||||||||||||| || ||||||| || || ||||||||| |
|
|
| T |
56329328 |
ggactaaaagttacaactacaatattgtaacataattatattctccattcattcatttgataatgattataatgaccaaccaattatttata |
56329237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 18102696 - 18102741
Alignment:
| Q |
136 |
tacaactatattattctaacataattaaatttttcatttattcatt |
181 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||| ||||||| |
|
|
| T |
18102696 |
tacaactatatcattctaacataactaaattcttcattcattcatt |
18102741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University