View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_34 (Length: 247)
Name: NF9416_low_34
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 39259667 - 39259878
Alignment:
| Q |
1 |
gaaattgacagcactcaacaaggccaaaaatgcataataataatctatacgtgagacatttagattattcaaaatccaacccttatgaccatttttactt |
100 |
Q |
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| T |
39259667 |
gaaattgacagcactcaacaaggccaaaaatgcataataataatctatacgcgagacatttagattattcaaaatccaacccttatgaccatttttactt |
39259766 |
T |
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| Q |
101 |
gtgagatcagcaacaattgatagaagaaaagtactcaaaaaattcccaatgctcaaagttgttgtggcgtatgatgttccaagacttttcatggattctg |
200 |
Q |
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| T |
39259767 |
gtgagatcagcaacaattgatagaagaaaagtactcaaaaaattcccaatgctcaaagttgttgtggcgtatgatgttccaagacttttcatggattctg |
39259866 |
T |
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| Q |
201 |
gcgcttgatcgt |
212 |
Q |
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|||||||||||| |
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| T |
39259867 |
gcgcttgatcgt |
39259878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 39244248 - 39244453
Alignment:
| Q |
5 |
ttgacagcactcaacaaggccaaaaatgcataataataatctatacgtgagacatttagattattcaaaatccaacccttatgaccatttttacttgtga |
104 |
Q |
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|||||| |||| |||||||||||||| |||||||||||||||| | |||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |
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| T |
39244248 |
ttgacaacacttaacaaggccaaaaaagcataataataatctaaatgtgagatatttagattatctaaaatccaacctttatgaccatgtttacttgtga |
39244347 |
T |
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| Q |
105 |
gatcagcaacaattgatagaagaaaagtactcaaaaaattcccaatgctcaaagttgttgtggcgtatgatgttccaagacttttcatggattctggcgc |
204 |
Q |
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| T |
39244348 |
gacgagcaacatttgatagaagaaaagtactcaaaaaatttcccatgctcaaggatgttgtagcatatgatgatccaaggcttttcatagattcaggtgc |
39244447 |
T |
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| Q |
205 |
ttgatc |
210 |
Q |
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|||||| |
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| T |
39244448 |
ttgatc |
39244453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 212
Target Start/End: Original strand, 39250185 - 39250392
Alignment:
| Q |
5 |
ttgacagcactcaacaaggccaaaaatgcataataataatctatacgtgagacatttagattattcaaaatccaacccttatgaccatttttacttgtga |
104 |
Q |
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|||||| |||| | |||||||||||| |||||||||||||||| | |||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
39250185 |
ttgacaacacttatcaaggccaaaaaagcataataataatctaaatgtgagatatttagattatccaaaatccaacctttatgaccatgtttacttgtga |
39250284 |
T |
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| Q |
105 |
gatcagcaacaattgatagaagaaaagtactcaaaaaattcccaatgctcaaagttgttgtggcgtatgatgttccaagacttttcatggattctggcgc |
204 |
Q |
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| T |
39250285 |
gacgagcaacatttgataaaagaaaagtactcaagtaatttcccatgctaatggttgttgaataatatgatgttccaaggcttttcgttgattcaggtgc |
39250384 |
T |
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| Q |
205 |
ttgatcgt |
212 |
Q |
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|||||||| |
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| T |
39250385 |
ttgatcgt |
39250392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 39256446 - 39256506
Alignment:
| Q |
32 |
gcataataataatctatacgtgagacatttagattattcaaaatccaacccttatgaccat |
92 |
Q |
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|||||||| ||||||| ||| |||| ||||||||||||||||||||||| || ||||||| |
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| T |
39256446 |
gcataatagtaatctaaacgagagatgtttagattattcaaaatccaacctttgtgaccat |
39256506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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