View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9416_low_36 (Length: 226)
Name: NF9416_low_36
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_36 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 22875361 - 22875559
Alignment:
| Q |
19 |
gtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22875361 |
gtatcacacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
22875460 |
T |
|
| Q |
119 |
atgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
22875461 |
atgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataatccctatagttatcatgaataccaaact |
22875559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 22888731 - 22888929
Alignment:
| Q |
19 |
gtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22888731 |
gtatcacacctttgtagactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
22888830 |
T |
|
| Q |
119 |
atgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
22888831 |
acgtgggccatattcatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaataccaaact |
22888929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22839484 - 22839683
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22839484 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaacccttcgtggcagagtatagatctttgaacttaaatc |
22839583 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
22839584 |
tatgtgggccatattcatgttcccaatcttcaagaacctcaacaaacttcttcaatttgatataatacataacccctaaagttatgatgaataccaaact |
22839683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22830463 - 22830662
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22830463 |
ggtatcacacctttgtagactttaccaaatccaccaactcccagtatccccttttccctgaaacccttcgtggcagagtatagatctttgaacttaaatc |
22830562 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
22830563 |
tatgtgggccatattcatgttcccaatcttcaagaacctcatcaaacttcttcaatttgatataatacataacccctaaagttatgatgaataccaaact |
22830662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22880024 - 22880223
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
22880024 |
ggtatcacacctttgtagactctaccaaatccaccaactcccaggagccccttttccctgaaaccttttgtggctgagtatagatctttgaatttaaatc |
22880123 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22880124 |
tacgtgggccatattcatgtttccaatcttcaagaacttcatcaaacttcttcaatttgagataatacataacccctaaagttatcatgaataccaaact |
22880223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22825690 - 22825889
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
22825690 |
ggtatgacacctttgtagactctaccaaatccaccaactcccagtagctcgttttccctgaaaccctttgtagcaaagtatagatctttgaacttaaatc |
22825789 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
22825790 |
tatgtgggccatattcatgttcccaatcttcaagaacctcatcaaacttcttcaatttgatataatacataacccctaaagatatcatgaataccaaact |
22825889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22814459 - 22814658
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22814459 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccctttttccctgaacccctttgtggcaaagtatagatctttgaacttaaatc |
22814558 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| ||||| ||||| ||||| |||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
22814559 |
tatgtgggccatattcatgttcccaatcttcaagaatctcagcaaacatcttccgtttgatataatatataacccctaaagttatcatgaatagcaaact |
22814658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 22804771 - 22804967
Alignment:
| Q |
21 |
atcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatctat |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22804771 |
atcacacctttgtatactctaccaaatccaccaactcccaatagccccttttccctgaaaccctttgtggcaaagtatagatctttgaacttaaatctat |
22804870 |
T |
|
| Q |
121 |
gtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
22804871 |
gtgggccatattcttgttcccaatcttcaagaatctcagaaaacttcttccgtttgatataataaataacccctaaagttatcatgaataccaaact |
22804967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22893385 - 22893584
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
22893385 |
ggtaacacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggcaaagtacaaatctttgaacttaaatc |
22893484 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| ||||||||||| | ||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
22893485 |
tatgtgggccatattcttgttcccaatcttcaagaatctcagcaaacttcttccgtctgatataatacataacccctaaagttatcatgaatatcaaact |
22893584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 22809053 - 22809251
Alignment:
| Q |
19 |
gtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||| || | ||||||||||||||||||||||| |
|
|
| T |
22809053 |
gtatcacacctttgtagactctaccaaatccaccaactcctagtagacccttttccccgaaaccttttgtagcaaaatatagatctttgaacttaaatct |
22809152 |
T |
|
| Q |
119 |
atgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||| |||||| ||||||||||| | |||||| |
|
|
| T |
22809153 |
atgtggaccatattcctgttcccaatcttcaagaatctcagcaaacttcttccatttgatataatacataatccctaaggttatcatgaataacaaact |
22809251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22857870 - 22858069
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
22857870 |
ggtatcacacctttgtagactctaccaaatccaccaactcccaacagcccctttaccatgaaaccctttgtggcaaagtatatatctttgaacttaaatc |
22857969 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| | ||||||||||| || || || |||||||| || ||||| ||| ||||| | |||||| |
|
|
| T |
22857970 |
tatgtgggccatattcatgttcccaatcttcaagaaccttagcaaacttcttctgttcgatatgatacataatccttaaagctattatgaatagcaaact |
22858069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 22885053 - 22885224
Alignment:
| Q |
36 |
actctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatctatgtgggccatattgat |
135 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
22885053 |
actctaccaaatccaccaacttccaatagccccttttccatgaaaccctttgtagcaaagtatagatctttgaacttaaatctatgagggccatattcat |
22885152 |
T |
|
| Q |
136 |
gttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaa |
208 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||| ||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
22885153 |
gttcccaatcttcaagaatctcagcaaacatcttccgtttgatataatatataa-ccctaaagttatcatgaa |
22885224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 22897704 - 22897903
Alignment:
| Q |
21 |
atcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatctat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
22897704 |
atcacacctttgtagactctaccaaatccaccaactcctaatagacccttttccttgaaaccctttgtggcaaagtacaaatctttgaacttaaacctat |
22897803 |
T |
|
| Q |
121 |
gtgggccatattgatgttcccaatcttcaagaacctcatcaaacttctt---caatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
| |||||||||| ||| |||||||||||||| | |||| |||||||||| | ||||| |||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
22897804 |
gagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaaccaaact |
22897903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22913103 - 22913200
Alignment:
| Q |
21 |
atcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| | |||| |||| ||| ||||||||||||| || |||||| ||||||| |||| ||||| |
|
|
| T |
22913103 |
atcacacctttgtagactctaccaaatccacctgttcctaatagctccttctccttgaaaccctttgttgcaaagtataaatctttgtacttgaatct |
22913200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 21151282 - 21151083
Alignment:
| Q |
18 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagccccttttccctgaaaccctttgtggctgagtatagatctttgaacttaaatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| || | |||||||||||||||||||||| |
|
|
| T |
21151282 |
ggtatcacacctttgtagactctaccaaatccaccaactcccagtagacccttttccccgaaaccttttgtagcaaaatatagatctttgaacttaaatc |
21151183 |
T |
|
| Q |
118 |
tatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttcttcaatttgacataatacataacccctaaagttatcatgaacaccaaact |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21151182 |
tatgtgggccatattcatgttcccaatcttcaagaatctcagaaaacttcttccgtttgatataatacataacccctaaagttatcatgaataccaaact |
21151083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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