View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9416_low_37 (Length: 219)
Name: NF9416_low_37
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 36896789 - 36896978
Alignment:
| Q |
14 |
cagagacagtaacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaac |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36896789 |
cagaaacagtaacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaac |
36896888 |
T |
|
| Q |
114 |
ttgacacctaggtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36896889 |
ttgacacctaggtggttgagaatgttgaactgacccacctcttcctttctttgaaccagaagaagaaggagaaccagcagcaatggtagt |
36896978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 22682223 - 22682327
Alignment:
| Q |
24 |
aacagtaggggatttagagtgcatgctacaaactttgtgtctagaatagtaagctttagcatcagtcagatctagtttacatccttcaacttgacaccta |
123 |
Q |
| |
|
||||| ||| ||||| || ||||||| ||||||||| ||||||||||| ||||| |||||| || ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
22682223 |
aacagaaggagattttgaatgcatgcaacaaactttatgtctagaataataagccttagcaccactcagatctactttacaaccttcaacttgacaccta |
22682322 |
T |
|
| Q |
124 |
ggtgg |
128 |
Q |
| |
|
||||| |
|
|
| T |
22682323 |
ggtgg |
22682327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University