View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_4 (Length: 474)
Name: NF9416_low_4
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 7 - 449
Target Start/End: Complemental strand, 40752959 - 40752517
Alignment:
| Q |
7 |
agaatgacataggataatgtatctatttaagtacataaatagggcacaattgtcttgtgaagacaacaaaagtgacttgccatccacagccctaaaccaa |
106 |
Q |
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| T |
40752959 |
agaatgacataggataatgtatctatttaagtacataaatagggcacaattgtcttgtgaagacaacaaaagtgacttgccatccacagccctaaaccaa |
40752860 |
T |
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| Q |
107 |
cccctctcacttcactttcttcaagacttctctctcccatgcttgatgctcaagacttttgttgcaccataattctataaacaatatctacagcaccctc |
206 |
Q |
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| T |
40752859 |
cccctctcacttcactttcttcaagacttctctctcccatgcttgatgctcaagacttttgttgcaccataattctataaacaatatctacagcaccctc |
40752760 |
T |
|
| Q |
207 |
atctaccatattccacacatggatgattcttcttctgcagctgaagacaccaagagttgtccacgtggtcactggcgacccgccgaagatgaaaaacttc |
306 |
Q |
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| T |
40752759 |
atctaccatattccacacatggatgattcttcttctgcagctgaagacaccaagagttgtccacgtggtcactggcgacccgccgaagatgaaaaacttc |
40752660 |
T |
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| Q |
307 |
gtcaacttgttgaacaatatggtgcccaaaattggaattcaattgctgaaaaactccaaggaagatcaggtatgtattatgcaataatattaattaaagc |
406 |
Q |
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| T |
40752659 |
gtcaacttgttgaacaatatggtgcccaaaattggaattcaattgctgaaaaactccaaggaagatcaggtatgtattatgcaataatattaattaaagc |
40752560 |
T |
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| Q |
407 |
tttattattaattgatttagtttggggagtgcttgctgctgtt |
449 |
Q |
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| T |
40752559 |
tttattattaattgattttgtttggggagtgcttgctgctgtt |
40752517 |
T |
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