View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9416_low_9 (Length: 400)
Name: NF9416_low_9
Description: NF9416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9416_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 28417618 - 28417242
Alignment:
| Q |
9 |
agcacagaatcacctatctttttccaatttttccagtcatgatcgtcacagaatattacttcgaacattgattctgctttctcattcgcaagaaattgta |
108 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28417618 |
agcacagaatcacctatctttttcctatttttccagtcatgatcgtcgcagaatattacttcgaacattgattctgctttctcattagcaagaaattgta |
28417519 |
T |
|
| Q |
109 |
aagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagtccaaatttcatggcagctacacttccacaagcaccaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28417518 |
aagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagtccaaatttcatggcagctacacttccacaagcaccaag |
28417419 |
T |
|
| Q |
209 |
tacaatccgaggcttcctcttagcatc-aaattcattatcatatgtaacaaactttccaattgcacttgtagagtctgagttagccatcatcgccaatat |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28417418 |
tacaatccgaggcttcctcttagcatcaaaattcattatcatatgtaacaaactttccaattgcacttgtagagtctgagttagccatcatcgccaatat |
28417319 |
T |
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| Q |
308 |
annnnnnnaacaatgccttcaatcttgattcttatatcacacgcagctcaaaatttcagattcctgtaacataatac |
384 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28417318 |
atttttttaacaatgccttcaatcttgattcttatatcacacgcagctcaaaatttcagattcctgtaacataatac |
28417242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 28403999 - 28403843
Alignment:
| Q |
71 |
gaacattgattctgctttctcattcgcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagt |
170 |
Q |
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||||| ||||||||||||||||| |||||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||||| |||||| || ||||||| |
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| T |
28403999 |
gaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagt |
28403900 |
T |
|
| Q |
171 |
ccaaatttcatggcagctacacttccacaagcaccaagtacaatccgaggcttcctc |
227 |
Q |
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||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
28403899 |
ccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
28403843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 28585797 - 28585953
Alignment:
| Q |
71 |
gaacattgattctgctttctcattcgcaagaaattgtaaagctgtttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagt |
170 |
Q |
| |
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||||| ||||||||||||||||| |||||||||| |||| ||||| ||| ||||| ||| ||||||||||||||||||| |||||| || ||||||| |
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| T |
28585797 |
gaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagt |
28585896 |
T |
|
| Q |
171 |
ccaaatttcatggcagctacacttccacaagcaccaagtacaatccgaggcttcctc |
227 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |
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|
| T |
28585897 |
ccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
28585953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 280
Target Start/End: Complemental strand, 28419962 - 28419804
Alignment:
| Q |
116 |
ttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagtccaaatttcatggcagctacacttccacaagcaccaagtacaatc |
215 |
Q |
| |
|
||||||||||| || | ||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
28419962 |
ttttgtgacaattgcatgtacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatc |
28419863 |
T |
|
| Q |
216 |
cgaggcttcctcttagcatcaaattcattatcatatgtaacaaactttccaattgcacttgtaga |
280 |
Q |
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|||||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| |
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| T |
28419862 |
cgaggcttcctcttagcatcaaat------tcatgtgtaacagattttccaattgcacttgtaga |
28419804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 116 - 280
Target Start/End: Original strand, 28582228 - 28582386
Alignment:
| Q |
116 |
ttttgtgacaacagcttttacttctgcccattctgataaagcacgaagaacaagtccaaatttcatggcagctacacttccacaagcaccaagtacaatc |
215 |
Q |
| |
|
||||||||||| || | ||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
28582228 |
ttttgtgacaattgcatgtacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatc |
28582327 |
T |
|
| Q |
216 |
cgaggcttcctcttagcatcaaattcattatcatatgtaacaaactttccaattgcacttgtaga |
280 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| |
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| T |
28582328 |
cgaggcttcctcttagcatcaaat------tcatgtgtaacagattttccaattgcacttgtaga |
28582386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 28404070 - 28404024
Alignment:
| Q |
9 |
agcacagaatcacctatctttttccaatttttccagtcatgatcgtc |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
28404070 |
agcacagaatcacctatctttttccaatttttccactcagaatcgtc |
28404024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 28585726 - 28585760
Alignment:
| Q |
9 |
agcacagaatcacctatctttttccaatttttcca |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
28585726 |
agcacagaatcacctatctttttccaatttttcca |
28585760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 28403828 - 28403787
Alignment:
| Q |
263 |
tccaattgcacttgtagagtctgagttagccatcatcgccaa |
304 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
28403828 |
tccaattgcactttttgagtctgagttagccatcatcaccaa |
28403787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 28585968 - 28586009
Alignment:
| Q |
263 |
tccaattgcacttgtagagtctgagttagccatcatcgccaa |
304 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| |||| |
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|
| T |
28585968 |
tccaattgcactttttgagtctgagttagccatcatcaccaa |
28586009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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