View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9417_high_3 (Length: 315)
Name: NF9417_high_3
Description: NF9417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9417_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 299
Target Start/End: Original strand, 4239515 - 4239809
Alignment:
| Q |
9 |
agcataggctcatctgtaggtgcatctaggaattgggtaagttggctgagatccaagtctatttaacacaaataactagagttagtgttataattaaaaa |
108 |
Q |
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| T |
4239515 |
agcataggctcatctgtaggtgcatctaggaattgggtaagttggctgagatccaagtctatttaacacaaataactagagttagtgttataattaaaaa |
4239614 |
T |
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| Q |
109 |
atggcattgcattacatcataattattgtagta--gcacatactcaaaa--acatgcatttttatttctaggacttgattgcactaactgaaactacact |
204 |
Q |
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| T |
4239615 |
atggcattgcattacatcataattattgtagtatagcacatactcaaaaaaacatgcatttttatttctaggacttgattgcactaactgaaactacact |
4239714 |
T |
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| Q |
205 |
agttaccttttaacgacttctacttggagaatgtttttccctttgttcgattcaatttaaaagggcatatttcgtatgttgcaggtaaagcttag |
299 |
Q |
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| T |
4239715 |
agttaccttttaacaacttctacttggagaatgtttttccctttgttcgattcaatttaaaagggcatatttcgtatgttgcaggtaaagcttag |
4239809 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 42818977 - 42819068
Alignment:
| Q |
138 |
agtagcacatactcaaaaacatgcatttttatttctaggacttgattgcactaactgaaactacactagttaccttttaacgacttctactt |
229 |
Q |
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| T |
42818977 |
agtagcacatactcctgaacatgcatttctatttatagggccatattgcactaacttaaactacactagtttccttgtaaagacttctactt |
42819068 |
T |
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