View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9417_low_16 (Length: 244)
Name: NF9417_low_16
Description: NF9417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9417_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 1415614 - 1415486
Alignment:
| Q |
104 |
gggtgttgttttcctattgttgtggactaatgtagatcaagtggattaatagtagttgcaaacgaacaaagttgtgttgaaaccaagggacaaaaagata |
203 |
Q |
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| T |
1415614 |
gggtgttgttttcctattgttgtggactaatgtagatcaagtggattaatagtagttgcaaacgaacaaagttgtgttgaaaccaagggacaaaaagata |
1415515 |
T |
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| Q |
204 |
aattaacatgactgtcaggtcactccctt |
232 |
Q |
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| T |
1415514 |
aattagcatgactgtcaggtcactccctt |
1415486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 1415687 - 1415599
Alignment:
| Q |
1 |
cttttgattctttaactagttgcttatttatgaaattggttcttgtggagattcaatataatttgtctctcatgggtgttgttttccta |
89 |
Q |
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| T |
1415687 |
cttttgattttttaactagttgcttatttatgaaattggttcttgtggagattcaatagaatttgtctctcatgggtgttgttttccta |
1415599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 1422077 - 1421992
Alignment:
| Q |
4 |
ttgattctttaactagttgcttatttatgaaattggttcttgtggagattcaatataatttgtctctcatgggtgttgttttccta |
89 |
Q |
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| T |
1422077 |
ttgattctttaactagttgtttatttatgaaattggtttttgtggagattcaatagaatttgcctcttaggggtgttgttttccta |
1421992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 1422007 - 1421940
Alignment:
| Q |
104 |
gggtgttgttttcctattgttgtggactaatgtagatcaagtggattaatagtagttgcaaacgaaca |
171 |
Q |
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| T |
1422007 |
gggtgttgttttcctattgttttggactaatgtagatcaggtggattaatagtagttgcaaaccaaca |
1421940 |
T |
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