View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9417_low_2 (Length: 951)

Name: NF9417_low_2
Description: NF9417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9417_low_2
NF9417_low_2
[»] chr5 (44 HSPs)
chr5 (18-937)||(17418697-17419616)
chr5 (575-935)||(30399278-30399638)
chr5 (631-937)||(30205782-30206088)
chr5 (575-937)||(30713962-30714324)
chr5 (575-923)||(30059570-30059918)
chr5 (575-812)||(29871399-29871636)
chr5 (575-923)||(30242926-30243262)
chr5 (575-812)||(30482617-30482854)
chr5 (697-937)||(29852634-29852874)
chr5 (697-937)||(30748978-30749206)
chr5 (296-440)||(30243675-30243819)
chr5 (261-436)||(30481951-30482128)
chr5 (284-440)||(30339828-30339984)
chr5 (261-443)||(29870805-29870989)
chr5 (575-937)||(30435035-30435385)
chr5 (697-813)||(30677820-30677936)
chr5 (289-416)||(30398663-30398790)
chr5 (294-427)||(30748297-30748430)
chr5 (289-427)||(30434471-30434609)
chr5 (273-442)||(29851932-29852101)
chr5 (289-440)||(30058937-30059088)
chr5 (697-812)||(30339178-30339293)
chr5 (740-923)||(30474750-30474930)
chr5 (297-402)||(29710311-29710416)
chr5 (846-923)||(29871658-29871735)
chr5 (846-923)||(30339079-30339156)
chr5 (846-923)||(30482876-30482953)
chr5 (302-426)||(30202743-30202867)
chr5 (301-405)||(30246138-30246242)
chr5 (284-332)||(30678644-30678692)
chr5 (334-436)||(4380358-4380460)
chr5 (851-917)||(17982404-17982470)
chr5 (297-411)||(30473963-30474077)
chr5 (751-797)||(30522299-30522345)
chr5 (751-797)||(30562639-30562685)
chr5 (851-937)||(30677708-30677794)
chr5 (22-69)||(30247409-30247456)
chr5 (388-443)||(30678540-30678595)
chr5 (300-366)||(17981534-17981600)
chr5 (301-363)||(30397937-30397999)
chr5 (575-664)||(30677969-30678058)
chr5 (104-151)||(30678918-30678965)
chr5 (119-156)||(29870619-29870656)
chr5 (394-431)||(30482158-30482195)
[»] chr4 (6 HSPs)
chr4 (694-937)||(20297131-20297374)
chr4 (296-441)||(20298049-20298194)
chr4 (297-441)||(20303931-20304074)
chr4 (751-937)||(13615990-13616174)
chr4 (292-366)||(13615444-13615518)
chr4 (846-912)||(52351438-52351504)
[»] chr7 (2 HSPs)
chr7 (575-935)||(26706545-26706905)
chr7 (291-427)||(26705914-26706050)
[»] chr1 (5 HSPs)
chr1 (845-937)||(7098895-7098987)
chr1 (751-923)||(7582273-7582445)
chr1 (291-354)||(7097997-7098060)
chr1 (693-794)||(7098743-7098844)
chr1 (501-532)||(7582681-7582712)


Alignment Details
Target: chr5 (Bit Score: 860; Significance: 0; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 860; E-Value: 0
Query Start/End: Original strand, 18 - 937
Target Start/End: Complemental strand, 17419616 - 17418697
Alignment:
Q  18 aatacaatatatgttccaacaacagtgtaacaagcaagtaattcctgcacatagatactatgatgaagaaaattacctgcacaactattagaaaatttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  17419616 aatacaatatatgttccaacaacagtgtaacaagcaagtaattcctgcacatagatactatcatgaagaaaattacatgcacaactattagaaaatttct 17419517  T
Q  118 ccttaggttgagcagtaaaatatctttcatgtactctggtgctctttctgaagaagtcaacaatgagaaaatataaagatttttgaataaaaatcaagtc 217  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17419516 cctttggttgagcagtaaaatatctttcatgtactctagtgctctttctgaagaagtcaacaacgagaaaatataaagatttttgaataaaaatcaagtc 17419417  T
Q  218 aattgcatcgtacatgtaagaaggggaaatagagatcctacctgtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatctt 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419416 aattgcatcgtacatgtaagaaggggaaatagagattctacctgtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatctt 17419317  T
Q  318 gtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctct 417  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17419316 gtcccaatcctccccggttccctccttgcatcgttcctctaatgttggggagtcataaatgttcagaaactcgggagaagtgaggtgtcgaataccctct 17419217  T
Q  418 agcaagcatctcaaaccttcacaatttccaatcgtcatggttcgaaggttactaaacgagaaaggagaggaaacacctcttcgttccactttcaacaacc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419216 agcaagcatctcaaaccttcacaatttccaatcgtcatggttcgaaggttactaaacgagaaaggagaggaaacacctcttcgttccactttcaacaacc 17419117  T
Q  518 cctctaagtttggtagttgtcgtaatatgagaaactctagagatggaaaaatcctcatcatcatcatccaagtatttcagatttttcatgtaagataatt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17419116 cctctaagtttggtagttgtcgtaatatgagaaactctagagatggaaaaatcctcatcatcatcatccaagtatttcagatttttcatgtaagataatt 17419017  T
Q  618 ccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcacaattactaagtgtaacattaactaaattactaagaatacttat 717  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17419016 ccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcacaattactaagtgcaacattaactaaattactaagaatacttat 17418917  T
Q  718 ccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtttctcagcactaacaata 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17418916 ccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagttgctcagcactaacaata 17418817  T
Q  818 ggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactac 917  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  17418816 ggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattac 17418717  T
Q  918 caacatcttttaagcctttg 937  Q
    ||||||||||||||||||||    
T  17418716 caacatcttttaagcctttg 17418697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 575 - 935
Target Start/End: Original strand, 30399278 - 30399638
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| | ||| | |||||||||||||   ||||||||  |||||||||||| | ||  ||| ||||||   ||||  |    
T  30399278 tcatcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgc 30399377  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||| | ||||  || |  ||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||| |||||||||||||||||||||||||    
T  30399378 aattcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttga 30399477  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtct 874  Q
    |||||||||||||||||| |||| || || |||||||| | | ||||  || || ||| ||| |||||||| ||| |||||||||||||| || ||||||    
T  30399478 gtgaggttgaagcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataattcatgaaggtct 30399577  T
Q  875 tttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctt 935  Q
    |||||||| ||||||| |||  ||||||||| ||||||||| |||| ||||||||||||||    
T  30399578 tttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagcctt 30399638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 631 - 937
Target Start/End: Original strand, 30205782 - 30206088
Alignment:
Q  631 agattgtagtttaccaaatgacgaaagccgcacacagttctcacaattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaac 730  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| | ||||  || |  |||||||||||| |||||||||||||||||||||||     
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaag 30205881  T
Q  731 aatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtca 830  Q
    |||| ||  | ||||| |   ||| |||| | |||||||||||||||||||||||||||||||| ||||| ||||  ||||| | |||||||||| || |    
T  30205882 aataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggttgaagcacttcaaatagttgctcaaaactaatagtaggggtcttcgtaa 30205981  T
Q  831 attcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaa 930  Q
    || | || |||||  ||||||| || |||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||| |||||    
T  30205982 atccgtcattgctggtccacgaaaaacataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaa 30206081  T
Q  931 gcctttg 937  Q
     ||||||    
T  30206082 acctttg 30206088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 575 - 937
Target Start/End: Complemental strand, 30714324 - 30713962
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| || ||   | |||||  ||||   ||||||||| |||||||||||| | ||| ||||||||||   ||||  |    
T  30714324 tcatcatcatccaagtatttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgc 30714225  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||    ||||  || |  ||||||||||||||||||| ||||||||||||||||  ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  30714224 aatggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttga 30714125  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcg-ttgcttttccacgacaagcataattcttggaggtc 873  Q
    ||||||||||||| |||| |||| || |||||||||||||| |||||||||||  ||||| | | |||  |||||| |||||| ||||||| || |||||    
T  30714124 gtgaggttgaagctcttcgagtacttgctcagcactaacaacaggggtctttg-gaattccttgtttgtctttccatgacaagtataattcatgaaggtc 30714026  T
Q  874 ttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    ||||||||| |||||||||||  ||| ||||||| ||||||| |||||||  ||||| ||||||    
T  30714025 ttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttg 30713962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 575 - 923
Target Start/End: Original strand, 30059570 - 30059918
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||    |||| |||| ||||| |||||| | ||  ||||||||||   |||| ||    
T  30059570 tcatcatcatccaagtatttcagattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttac 30059669  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    ||    ||||| ||| |  ||||||||||||||||||| ||||||||||||| ||  ||| ||| |||||| || ||||||||||||| |||||||||||    
T  30059670 aacgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttga 30059769  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcg-ttgcttttccacgacaagcataattcttggaggtc 873  Q
    |||||||||||| |||||||||| || |||| ||||||||| |||| ||||||  ||||| | | |||  |||||| |||||| ||||||| || |||||    
T  30059770 gtgaggttgaagaacttcaagtacttgctcaacactaacaacagggttctttg-gaattccttgtttgtctttccatgacaagtataattcatgaaggtc 30059868  T
Q  874 ttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    ||||||||| |||||||||||  ||| ||||||| |||| || |||||||    
T  30059869 ttttttacccatcaaattagccgcttcagcttcaaataacctgccaacat 30059918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 575 - 812
Target Start/End: Original strand, 29871399 - 29871636
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||   ||||||||| |||||||||||| | ||| ||||||||||   || |  |    
T  29871399 tcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgc 29871498  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||    |||| ||| |  || |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||    
T  29871499 aatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttga 29871598  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaa 812  Q
    ||||||||||||| |||| |||| || |||||||||||    
T  29871599 gtgaggttgaagctcttcgagtacttgctcagcactaa 29871636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 575 - 923
Target Start/End: Complemental strand, 30243262 - 30242926
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| | ||| |   |||||||||||   |||||| || |||||||||||| | ||| ||||||||||   || |  |    
T  30243262 tcatcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgc 30243163  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||| | ||||  || |  || |||||||||||||| | ||||||||||||||||  ||| ||| |||||| || |||||||||||||||||||||||||    
T  30243162 aattccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttga 30243063  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtct 874  Q
    ||||||||||||||||||||||| || |||||||||||  ||||            ||||||  | |  | |||| |||||||||||||| || ||||||    
T  30243062 gtgaggttgaagcacttcaagtacttgctcagcactaattatag------------attcatgttgggatatccatgacaagcataattcatgaaggtct 30242975  T
Q  875 tttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    |||||||| |||||||||||  ||| ||||||||||||||| |||||||    
T  30242974 tttttacccatcaaattagccgcttcagcttcagataaactgccaacat 30242926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 575 - 812
Target Start/End: Original strand, 30482617 - 30482854
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||   ||||||||| |||||||||||| | ||| ||||||||||   || |  |    
T  30482617 tcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgc 30482716  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||| | ||||  || |  || ||||||||||||||  |||||||||||||||||| |||  || |||| |||| ||||| ||||||| |||||||||||    
T  30482717 aattccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttga 30482816  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaa 812  Q
    ||||||||||||| ||||||||| || |||||||||||    
T  30482817 gtgaggttgaagctcttcaagtacttgctcagcactaa 30482854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 697 - 937
Target Start/End: Original strand, 29852634 - 29852874
Alignment:
Q  697 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 796  Q
    |||| |||||||||  |||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||||||||||||||||||||||||| |||| |||    
T  29852634 taaactactaagaaggcttatccaacttggtaacgataatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagt 29852733  T
Q  797 agtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattagctt 896  Q
    | || |||| ||  || | | |||| ||  || ||| |||| ||||||| ||| ||||| |||||||| || | |||| ||||||| |||||||||||      
T  29852734 acttgctcatcatgaatagttgggggctcagtaaatccatcattgctttcccatgacaaacataattcatgaatgtctgttttacccatcaaattagccg 29852833  T
Q  897 cttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    ||| ||||||||||||||| || ||||||||||||||||||    
T  29852834 cttcagcttcagataaactgcccacatcttttaagcctttg 29852874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 697 - 937
Target Start/End: Original strand, 30748978 - 30749206
Alignment:
Q  697 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 796  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  30748978 taaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagcacttcaagt 30749077  T
Q  797 agtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattagctt 896  Q
    | || ||||||||||||  |||            |||| || |||  |  ||| |||||||||||||| || |||||||||||||| |||||||||||      
T  30749078 acttgctcagcactaaccgtag------------attcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatcaaattagccg 30749165  T
Q  897 cttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    ||| ||||||||||||||| |||||||  ||||| ||||||    
T  30749166 cttcagcttcagataaactgccaacattgtttaatcctttg 30749206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 296 - 440
Target Start/End: Complemental strand, 30243819 - 30243675
Alignment:
Q  296 tttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagaga 395  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||  | | |||||| |||| || |||||||||    
T  30243819 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagaga 30243720  T
Q  396 agtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 440  Q
    |||||||||||||||||||||  ||||||||| ||| ||||||||    
T  30243719 agtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30243675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 261 - 436
Target Start/End: Original strand, 30481951 - 30482128
Alignment:
Q  261 gtaaacgtctcttgcttcttaatact---ttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctct 357  Q
    |||||||||||| |||||||||| ||   | |||| ||||||||||||||||||||||||||||||||||||||  ||||| || |||||||| ||||||    
T  30481951 gtaaacgtctct-gcttcttaatcctcggtaaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctct 30482049  T
Q  358 aatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaacctt 436  Q
    ||||||||| | ||  ||||  |||||| ||||||||||||||||||||||||||||||  ||||||||| ||| ||||    
T  30482050 aatgttgggcattcccaaattgtcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctt 30482128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 284 - 440
Target Start/End: Complemental strand, 30339984 - 30339828
Alignment:
Q  284 actttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcag 383  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| | | |   ||  ||||    
T  30339984 acttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcag 30339885  T
Q  384 aaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 440  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||    
T  30339884 aagctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30339828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 261 - 443
Target Start/End: Original strand, 29870805 - 29870989
Alignment:
Q  261 gtaaacgtctcttgcttcttaatact---ttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctct 357  Q
    |||||||||||| |||||||||| ||   | |||| |||| |||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||    
T  29870805 gtaaacgtctct-gcttcttaatcctcggtaaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctct 29870903  T
Q  358 aatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatt 443  Q
    ||||||||| |  | | |||   ||||| |||||| |||||||||||||||||||||||  ||||||||| ||| |||||||||||    
T  29870904 aatgttgggcaaccctcaattgccagaagctcaagtgaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 29870989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 575 - 937
Target Start/End: Original strand, 30435035 - 30435385
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    |||||||||||||||||||||||||| |||||   | ||| |   |||   ||||||||| |||||||||||||| ||| ||||||||||   || |  |    
T  30435035 tcatcatcatccaagtatttcagattattcataccatatactctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgc 30435134  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||  | |||| ||| |  || |||||||||||||||| ||||||||||||||||| ||| ||| |||||| || |||| | ||||||||||||||||||    
T  30435135 aatccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttga 30435234  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgttgc-ttttccacgacaagcataattcttggaggtc 873  Q
    ||||||||||||| |||| |||| || |||||  ||||  ||||            |||| | |||||  | ||||||||||||||||||| || |||||    
T  30435235 gtgaggttgaagctcttcgagtaattgctcagatctaattatag------------attcct-gttgcgatatccacgacaagcataattcatgaaggtc 30435321  T
Q  874 ttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    |||||||||  ||||||||||  ||| |||||||||||||||||||||||  ||||| ||||||    
T  30435322 ttttttacccttcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 30435385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 697 - 813
Target Start/End: Complemental strand, 30677936 - 30677820
Alignment:
Q  697 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 796  Q
    |||||||||||||||| ||||||||||||||||| ||| ||  ||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  30677936 taaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggtttaagcacttcaagt 30677837  T
Q  797 agtttctcagcactaac 813  Q
    | || ||||||||||||    
T  30677836 acttgctcagcactaac 30677820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 30398663 - 30398790
Alignment:
Q  289 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 388  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| | ||||  ||  |||||| ||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacct 30398762  T
Q  389 caagagaagtgaggtgtcgaataccctc 416  Q
    |||||||||||||||||| |||||||||    
T  30398763 caagagaagtgaggtgtctaataccctc 30398790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 294 - 427
Target Start/End: Original strand, 30748297 - 30748430
Alignment:
Q  294 tatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaaga 393  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| || |||||||| ||||||||||||||| | |||   || |  |||| |||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaaga 30748396  T
Q  394 gaagtgaggtgtcgaataccctctagcaagcatc 427  Q
    |||||||||||||||||||||||  |||||||||    
T  30748397 gaagtgaggtgtcgaataccctccggcaagcatc 30748430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 289 - 427
Target Start/End: Original strand, 30434471 - 30434609
Alignment:
Q  289 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 388  Q
    |||| |||| |||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||| | |||   ||   ||||| ||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagct 30434570  T
Q  389 caagagaagtgaggtgtcgaataccctctagcaagcatc 427  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  30434571 caagagaagtgaggtgtcgaataccctccggcaagcatc 30434609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 273 - 442
Target Start/End: Original strand, 29851932 - 29852101
Alignment:
Q  273 tgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtca 372  Q
    |||||||||||| || |||| ||| ||||||||||||| |||||||||||||||||| |  |||||  | |||||||| ||||||||||||||| | |      
T  29851932 tgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaattt 29852031  T
Q  373 taaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaat 442  Q
    | |||   ||||| |||||||||||||||||||| |||||||||  ||||||||||||| |||| |||||    
T  29852032 ttaattgacagaagctcaagagaagtgaggtgtccaataccctccggcaagcatctcaatcctttacaat 29852101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 30058937 - 30059088
Alignment:
Q  289 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaact 388  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||| ||||||| || |  ||   ||  |||||| ||    
T  30058937 aactgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagct 30059036  T
Q  389 caagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcaca 440  Q
    ||||||||||||||||||||||||||||  |||| |||| ||| ||||||||    
T  30059037 caagagaagtgaggtgtcgaataccctccggcaaacatcgcaatccttcaca 30059088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 697 - 812
Target Start/End: Complemental strand, 30339293 - 30339178
Alignment:
Q  697 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 796  Q
    ||||||||||||||  |||||||||||||||||| ||| ||| |||||| || ||| | ||||| | |||||||||||||||||||||||| |||| ||     
T  30339293 taaattactaagaaggcttatccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttcgagc 30339194  T
Q  797 agtttctcagcactaa 812  Q
    | || |||||||||||    
T  30339193 acttgctcagcactaa 30339178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 740 - 923
Target Start/End: Original strand, 30474750 - 30474930
Alignment:
Q  740 tcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgt 839  Q
    |||||||||  ||||||||| | |||||||||||||||||||||||||| |||||||| || ||||||| ||  | | || ||||  ||   |||| | |    
T  30474750 tcatagtaaagtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttggtgtctcagt---ttcaccat 30474846  T
Q  840 tgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    |  |  |||| |||||| |||||||||||||||| |||||||| |||||||| || | | |||||||| |||| ||||||||||    
T  30474847 tattcctccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacat 30474930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 29710416 - 29710311
Alignment:
Q  297 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 396  Q
    |||||||| ||| |||||||||||| |||||||||  | ||| ||||||||||| ||||||||||||| | | | |||||  | ||||| ||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttgagaaattataaaaatacagaacctcaagagaa 29710317  T
Q  397 gtgagg 402  Q
    ||||||    
T  29710316 gtgagg 29710311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 846 - 923
Target Start/End: Original strand, 29871658 - 29871735
Alignment:
Q  846 tccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    |||| |||||||||||||  || |||||||||||||| |||||||||||  ||| ||||||||||||||| |||||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacat 29871735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 846 - 923
Target Start/End: Complemental strand, 30339156 - 30339079
Alignment:
Q  846 tccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    ||||||||||||||||||  || |||||||||||||| |||||||||||  ||| |||||||||||| || |||||||    
T  30339156 tccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacat 30339079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 846 - 923
Target Start/End: Original strand, 30482876 - 30482953
Alignment:
Q  846 tccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||||  ||| |||||||||||| || |||||||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacat 30482953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 30202743 - 30202867
Alignment:
Q  302 gaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgag 401  Q
    ||||||| |||||||||||||| | |||||| ||||| ||||||||||| ||||  ||| ||||| |  |  ||||  |||| || ||||| ||||||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaaccgaaaattgtcagcaaatcaagtgaagtgag 30202842  T
Q  402 gtgtcgaataccctctagcaagcat 426  Q
    ||||| |||||| ||||||||||||    
T  30202843 gtgtctaataccttctagcaagcat 30202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 301 - 405
Target Start/End: Complemental strand, 30246242 - 30246138
Alignment:
Q  301 ggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtga 400  Q
    |||||||||| ||||||||||| ||||||||  ||  | | |||||||||||||| ||||||||| || | || ||| ||||||| ||| ||||||||||    
T  30246242 ggaatatgagatatcttgtcccgatcctcccatgtctccttcttgcatcgctcctttaatgttggagaatgatgaatattcagaacctcgagagaagtga 30246143  T
Q  401 ggtgt 405  Q
    |||||    
T  30246142 ggtgt 30246138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 30678692 - 30678644
Alignment:
Q  284 actttaactttatttttggaatatgagctatcttgtcccaatcctcccc 332  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  30678692 acttaaactgtatttttggaatatgagctatcttgtcccaatcctcccc 30678644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 436
Target Start/End: Original strand, 4380358 - 4380460
Alignment:
Q  334 gttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaac 433  Q
    ||||| || |||||||| ||||||||||||||| |  ||   ||  |||||| ||||||||||||||||||||||||||||||  ||||||||| ||| |    
T  4380358 gttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatc 4380457  T
Q  434 ctt 436  Q
    |||    
T  4380458 ctt 4380460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 851 - 917
Target Start/End: Original strand, 17982404 - 17982470
Alignment:
Q  851 gacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactac 917  Q
    |||| ||||||||| | |||||||||||||||||| ||||| ||||||| | |||||||||||||||    
T  17982404 gacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 30473963 - 30474077
Alignment:
Q  297 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 396  Q
    ||||||||| || |||||||||||||| ||||| |||||||| | |||  ||||||||| |||||||||| |  |   ||| |||| ||||||||| |||    
T  30473963 ttttggaatgtgcgctatcttgtcccagtcctcaccggttcctttcttcaatcgctcctttaatgttgggcaacctcgaattttcaaaaactcaagtgaa 30474062  T
Q  397 gtgaggtgtcgaata 411  Q
    ||||||||| |||||    
T  30474063 gtgaggtgttgaata 30474077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 751 - 797
Target Start/End: Complemental strand, 30522345 - 30522299
Alignment:
Q  751 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagta 797  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  30522345 tattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 751 - 797
Target Start/End: Complemental strand, 30562685 - 30562639
Alignment:
Q  751 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagta 797  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  30562685 tattttcaagatcttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 851 - 937
Target Start/End: Complemental strand, 30677794 - 30677708
Alignment:
Q  851 gacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    |||||||||||||| || |||||||||||| | ||||| |||||  ||| |||||||||||||||| ||||||  ||||| ||||||    
T  30677794 gacaagcataattcatgaaggtcttttttatccatcaatttagccgcttcagcttcagataaactagcaacattgtttaatcctttg 30677708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 30247456 - 30247409
Alignment:
Q  22 caatatatgttccaacaacagtgtaacaagcaagtaattcctgcacat 69  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  30247456 caatatatgttccaacaacagtgtaataagcaagtgattccagcacat 30247409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 30678595 - 30678540
Alignment:
Q  388 tcaagagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaatt 443  Q
    |||||||| ||||||||||||||||||||  ||||||||| ||| |||||||||||    
T  30678595 tcaagagatgtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaatt 30678540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 17981534 - 17981600
Alignment:
Q  300 tggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggg 366  Q
    ||||||||| |||||||||||||| || || |||||||| || |||||||||| ||| |||||||||    
T  17981534 tggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctccaatgttggg 17981600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 30397937 - 30397999
Alignment:
Q  301 ggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgtt 363  Q
    |||||| | |||||||||| ||| ||||| || ||||||||||||||| ||||||||||||||    
T  30397937 ggaatacgtgctatcttgttccagtcctctcctgttccgtccttgcattgctcctctaatgtt 30397999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 664
Target Start/End: Complemental strand, 30678058 - 30677969
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcaca 664  Q
    |||||||||||||||||||||||||| |||||   |||||||  ||||   ||||||||| |||||||||||  | ||| ||||||||||    
T  30678058 tcatcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaacggaagccgcaca 30677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 30678965 - 30678918
Alignment:
Q  104 attagaaaatttctccttaggttgagcagtaaaatatctttcatgtac 151  Q
    ||||||| | || ||| |||||||||||||||||||||||||||||||    
T  30678965 attagaacaattgtccgtaggttgagcagtaaaatatctttcatgtac 30678918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 29870619 - 29870656
Alignment:
Q  119 cttaggttgagcagtaaaatatctttcatgtactctgg 156  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29870619 cttaggatgaacagtaaaatatctttcatgtactctgg 29870656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 30482158 - 30482195
Alignment:
Q  394 gaagtgaggtgtcgaataccctctagcaagcatctcaa 431  Q
    |||||||||||||||||||||||  |||||||||||||    
T  30482158 gaagtgaggtgtcgaataccctccggcaagcatctcaa 30482195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 2e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 694 - 937
Target Start/End: Complemental strand, 20297374 - 20297131
Alignment:
Q  694 aactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttca 793  Q
    ||||||||||||||||||| ||||||||||||||||| | | |||||||||| || |||||| |||||||||||||||||| |||||||||||||||||     
T  20297374 aactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttgaagcacttcg 20297275  T
Q  794 agtagtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtcttttttacctatcaaattag 893  Q
    |||| |||||||||||| ||| | || | ||| || |||| ||| ||||||| ||| |||||||||||||| || |||||||||||||| |||||||| |    
T  20297274 agtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtcttttttacccatcaaattgg 20297175  T
Q  894 cttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  20297174 cttcttgagcttcagatatactgccaacatcttttaagcctttg 20297131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 296 - 441
Target Start/End: Complemental strand, 20298194 - 20298049
Alignment:
Q  296 tttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagaga 395  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||   || |||||| ||| | | |   ||  |||||| |||||||||    
T  20298194 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagaga 20298095  T
Q  396 agtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaa 441  Q
    |||||||||| |||| || ||| ||||||||  ||| |||||||||    
T  20298094 agtgaggtgttgaatgccttctggcaagcattgcaatccttcacaa 20298049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 297 - 441
Target Start/End: Complemental strand, 20304074 - 20303931
Alignment:
Q  297 ttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactcaagagaa 396  Q
    |||||||||||| |||||||||||| ||||||| || |||||   |||||| || |||| |||||||||| | ||||||||  ||| || |||||| |||    
T  20304074 ttttggaatatgcgctatcttgtcc-aatcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtgaa 20303976  T
Q  397 gtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaa 441  Q
    ||||||  ||||||||| ||  ||||||||||||| |||| ||||    
T  20303975 gtgaggaatcgaataccttcaggcaagcatctcaatcctttacaa 20303931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 751 - 937
Target Start/End: Original strand, 13615990 - 13616174
Alignment:
Q  751 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtca-attcatcgttgcttttcca 849  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| ||  ||| |||||| |||||||||||| | || ||  ||| |||   | |||    
T  13615990 tattttcaagctcttgagatttg-gagaggt-gaagcacttcaagtacttgatcatcactaataataggggtctt-gacagatgaatctttgtgctgcca 13616086  T
Q  850 cgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
     |||||| ||||||| | ||||||||||||| | || ||||| ||||||||||||||| |||||||||| | || || ||||||||||    
T  13616087 tgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagcctttg 13616174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 13615444 - 13615518
Alignment:
Q  292 tttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggg 366  Q
    |||| |||||||||||| |||||||||||||| || ||||  ||||| ||||||||||||| ||  |||||||||    
T  13615444 tttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttcttcaatgttggg 13615518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 846 - 912
Target Start/End: Original strand, 52351438 - 52351504
Alignment:
Q  846 tccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataa 912  Q
    |||| |||| |||||||||| |||||||||||||||| |||||||| || ||| || | ||||||||    
T  52351438 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 52351504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 575 - 935
Target Start/End: Original strand, 26706545 - 26706905
Alignment:
Q  575 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaactttagagattgtagtttaccaaatgacgaaagccgcacacagttctcac 674  Q
    ||||||||||||||||||||||||||   |||  ||||||||||||||   | ||||||| |||||||||||| | ||| |||||||||| | ||||  |    
T  26706545 tcatcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgc 26706644  T
Q  675 aattactaagtgtaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttga 774  Q
    |||  | ||||  || |  ||||||||||||||||||||||| ||||||||||||  ||| ||| || |||||  |||||| ||||||||||||||||||    
T  26706645 aatccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttga 26706744  T
Q  775 gtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccacgacaagcataattcttggaggtct 874  Q
    |||||||||||||||||  ||||| | |||| |||||| | | || | ||| || ||| |||| ||| ||| ||| ||||||||||||| || ||||| |    
T  26706745 gtgaggttgaagcactttgagtagctgctcaacactaatagttggtggcttggtaaatccatcattgttttcccatgacaagcataatttttcgaggttt 26706844  T
Q  875 tttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctt 935  Q
    ||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  26706845 tttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagcctt 26706905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 26705914 - 26706050
Alignment:
Q  291 ctttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcctctaatgttggggagtcataaatgttcagaaactca 390  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||| |     ||||  |||||||||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactca 26706013  T
Q  391 agagaagtgaggtgtcgaataccctctagcaagcatc 427  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26706014 agagaagtgaggtgtcgaataccctctggcaagcatc 26706050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 845 - 937
Target Start/End: Original strand, 7098895 - 7098987
Alignment:
Q  845 ttccacgacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacatcttttaagcctttg 937  Q
    ||||| |||||||||||||| | ||||||||||||||| || ||||| ||||||| ||||||||||||||||||||||| || ||||||||||    
T  7098895 ttccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 751 - 923
Target Start/End: Complemental strand, 7582445 - 7582273
Alignment:
Q  751 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagtttctcagcactaacaataggggtctttgtcaattcatcgttgcttttccac 850  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||| ||  ||  |||||| ||||| ||||||     ||  ||| |||     |||     
T  7582445 tattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtggtcttaacagatgaatcattgtgcaaccat 7582346  T
Q  851 gacaagcataattcttggaggtcttttttacctatcaaattagcttcttgagcttcagataaactaccaacat 923  Q
    |||||||||||||| | ||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||    
T  7582345 gacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacat 7582273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 7097997 - 7098060
Alignment:
Q  291 ctttatttttggaatatgagctatcttgtcccaatcctccccggttccgtccttgcatcgctcc 354  Q
    ||||| |||||||||||| |||||||||||||| || ||||| ||||| |||||||||||||||    
T  7097997 ctttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctcc 7098060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 794
Target Start/End: Original strand, 7098743 - 7098844
Alignment:
Q  693 taactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttc 792  Q
    ||||||||||||||||| | || ||||||||||| ||  ||| ||| |  ||  ||  ||||||||||| |||||||||||  |||||||||||||||||    
T  7098743 taactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttc 7098842  T
Q  793 aa 794  Q
    ||    
T  7098843 aa 7098844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 532
Target Start/End: Complemental strand, 7582712 - 7582681
Alignment:
Q  501 ttccactttcaacaacccctctaagtttggta 532  Q
    ||||||||||||||||||||||||||||||||    
T  7582712 ttccactttcaacaacccctctaagtttggta 7582681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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