View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9417_low_9 (Length: 301)
Name: NF9417_low_9
Description: NF9417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9417_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 39179664 - 39179390
Alignment:
| Q |
19 |
aaactaagcttctaaaatcagtttccttgtccttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179664 |
aaactaagcttctaaaatcagtttccttgtccttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaata |
39179565 |
T |
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| Q |
119 |
gtttttcttgtccagcatcatgatggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagacctaaaaggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39179564 |
gtttttcttgtccagcatcatgatggaaatggttgaagaaaaaggctcagcaaacgggaaagaagattacactcaggatggaacagtagacctaaaaggt |
39179465 |
T |
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| Q |
219 |
agacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggtaaaatgaagccctttgct |
293 |
Q |
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| T |
39179464 |
agacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggtaaaatgaagccctttgct |
39179390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 39192262 - 39192098
Alignment:
| Q |
20 |
aactaagcttctaaaatcagtttccttgtcctt----aaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaa |
115 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
39192262 |
aactaagcttctaaaatcagtttccttttccttgattaaatacatcaaaagctcatgagaaaacctagtaaccttgcttgatcgccaaacaagtgaccaa |
39192163 |
T |
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| Q |
116 |
atagtttttcttgtccagcatcatgatggaaatggttgaagaaaaagggtcagcaaacgggaaag |
180 |
Q |
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| T |
39192162 |
gtagtttttcttgtccagcatcatgatggcaatggtagaagaaaaaggcccagcagaggggaaag |
39192098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 39221131 - 39221002
Alignment:
| Q |
51 |
ttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaatagtttttcttgtccagcatcatgatggaaatgg |
150 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
39221131 |
ttaaatacatcaaaagctcatgagaaaaactagtaaccttgcttgatccccacacaagtgaccaagtagtttttcttgtccagcatcatgatggcaatgg |
39221032 |
T |
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| Q |
151 |
ttgaagaaaaagggtcagcaaacgggaaag |
180 |
Q |
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| T |
39221031 |
tagaagaaaaaggctcagcaaaagggaaag |
39221002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 39218359 - 39218222
Alignment:
| Q |
141 |
atggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaaga |
240 |
Q |
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|||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
39218359 |
atggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcgaaga |
39218260 |
T |
|
| Q |
241 |
ctggaagatggaaagcttgctcctttatagtaggtaaa |
278 |
Q |
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||||| ||||||||||||||||||| |||||||||||| |
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| T |
39218259 |
ctggacgatggaaagcttgctccttcatagtaggtaaa |
39218222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 141 - 278
Target Start/End: Complemental strand, 39225457 - 39225320
Alignment:
| Q |
141 |
atggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaaga |
240 |
Q |
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|||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
39225457 |
atggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcgaaga |
39225358 |
T |
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| Q |
241 |
ctggaagatggaaagcttgctcctttatagtaggtaaa |
278 |
Q |
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||||| ||||||||||||||||||| |||||||||||| |
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| T |
39225357 |
ctggacgatggaaagcttgctccttcatagtaggtaaa |
39225320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 285
Target Start/End: Complemental strand, 39196779 - 39196643
Alignment:
| Q |
149 |
ggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaaga |
248 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| || |
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| T |
39196779 |
ggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaagatggtacagtagacctaaaaggtagacctgttttaagatcaaaaactggacga |
39196680 |
T |
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| Q |
249 |
tggaaagcttgctcctttatagtaggtaaaatgaagc |
285 |
Q |
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||||||||||||||||| |||||||||||| |||||| |
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| T |
39196679 |
tggaaagcttgctccttcatagtaggtaaagtgaagc |
39196643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 39241071 - 39240965
Alignment:
| Q |
178 |
aagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggtaa |
277 |
Q |
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||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||| |||||||||||| ||||| | |||||||| |
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| T |
39241071 |
aagaagattacactcaagatggaacagtagatttacaaggcagaccagttttaagatcaaagactggaacatggaaagcttgttccttccttgtaggtaa |
39240972 |
T |
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| Q |
278 |
aatgaag |
284 |
Q |
| |
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| ||||| |
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| T |
39240971 |
attgaag |
39240965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 39258496 - 39258399
Alignment:
| Q |
183 |
gattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggtaaaat |
280 |
Q |
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|||||||| |||||||| |||||| ||| |||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
39258496 |
gattacacgcaagatggcacagtaagtctacaaggtaaaccggttttaagatcaaagaccggaagatggaaagcttgctcttttatagtaggtaaaat |
39258399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 39248002 - 39247903
Alignment:
| Q |
177 |
aaagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggta |
276 |
Q |
| |
|
||||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||| || |||||||||| |||||| ||||| |||||||||| |
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| T |
39248002 |
aaagaagattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
39247903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 39300311 - 39300212
Alignment:
| Q |
177 |
aaagaagattacactcaagatggaacagtagacctaaaaggtagacccattttaagatcaaagactggaagatggaaagcttgctcctttatagtaggta |
276 |
Q |
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||||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||||||||| || |||||||||| |||||| ||||| |||||||||| |
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| T |
39300311 |
aaagaagattatactgaagatgggacagtggaccttaaaggtagaccagttttaagatcaaatacaggaagatggagagcttgttccttcatagtaggta |
39300212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 39221007 - 39220964
Alignment:
| Q |
250 |
ggaaagcttgctcctttatagtaggtaaaatgaagccctttgct |
293 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
39221007 |
ggaaagcttgcttctttatagtaggtaaaatgaagccttttgct |
39220964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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