View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9418_low_10 (Length: 296)

Name: NF9418_low_10
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9418_low_10
NF9418_low_10
[»] chr8 (8 HSPs)
chr8 (111-237)||(3095334-3095459)
chr8 (248-279)||(6374412-6374443)
chr8 (248-279)||(39765983-39766014)
chr8 (248-279)||(40228572-40228603)
chr8 (206-236)||(39970523-39970553)
chr8 (248-277)||(15160572-15160601)
chr8 (248-277)||(39463257-39463286)
chr8 (248-277)||(39698792-39698821)
[»] chr4 (12 HSPs)
chr4 (203-236)||(10573326-10573359)
chr4 (248-279)||(20448037-20448068)
chr4 (248-278)||(49080605-49080635)
chr4 (248-277)||(1819560-1819589)
chr4 (248-277)||(4505335-4505364)
chr4 (248-277)||(19451341-19451370)
chr4 (248-277)||(30261257-30261286)
chr4 (248-277)||(40345477-40345506)
chr4 (248-277)||(51733624-51733653)
chr4 (248-277)||(52253843-52253872)
chr4 (248-277)||(52957920-52957949)
chr4 (200-236)||(19878600-19878636)
[»] scaffold0332 (1 HSPs)
scaffold0332 (248-279)||(3934-3965)
[»] chr7 (10 HSPs)
chr7 (248-279)||(2297036-2297067)
chr7 (248-279)||(42880056-42880087)
chr7 (200-277)||(45948754-45948831)
chr7 (248-277)||(715987-716016)
chr7 (248-277)||(1741989-1742018)
chr7 (248-277)||(22297994-22298023)
chr7 (248-277)||(24780430-24780459)
chr7 (203-236)||(33682483-33682516)
chr7 (248-277)||(34274792-34274821)
chr7 (203-235)||(32501914-32501946)
[»] chr3 (12 HSPs)
chr3 (248-279)||(3152927-3152958)
chr3 (202-236)||(4759487-4759521)
chr3 (202-236)||(45213630-45213664)
chr3 (248-277)||(2458005-2458034)
chr3 (248-277)||(23208412-23208441)
chr3 (203-236)||(33194193-33194226)
chr3 (248-277)||(38016373-38016402)
chr3 (203-236)||(38277960-38277993)
chr3 (248-277)||(44676219-44676248)
chr3 (203-235)||(3152716-3152748)
chr3 (251-279)||(30431121-30431149)
chr3 (249-277)||(38140949-38140977)
[»] chr2 (6 HSPs)
chr2 (248-279)||(18579165-18579196)
chr2 (248-277)||(4051830-4051859)
chr2 (248-277)||(12566106-12566135)
chr2 (248-277)||(43427413-43427442)
chr2 (248-277)||(43971502-43971531)
chr2 (251-279)||(11188616-11188644)
[»] chr1 (12 HSPs)
chr1 (201-236)||(1430446-1430481)
chr1 (248-279)||(15573605-15573636)
chr1 (248-279)||(46045971-46046002)
chr1 (203-237)||(15646985-15647019)
chr1 (203-237)||(46286985-46287019)
chr1 (201-277)||(50249262-50249337)
chr1 (248-277)||(5463573-5463602)
chr1 (248-277)||(26755218-26755247)
chr1 (248-277)||(29567894-29567923)
chr1 (248-277)||(32807062-32807091)
chr1 (248-277)||(34032204-34032233)
chr1 (251-279)||(10842781-10842809)
[»] chr6 (4 HSPs)
chr6 (203-237)||(17552410-17552444)
chr6 (248-277)||(29399944-29399973)
chr6 (249-277)||(13503974-13504002)
chr6 (200-236)||(23936492-23936528)
[»] chr5 (8 HSPs)
chr5 (249-279)||(15167134-15167164)
chr5 (248-277)||(7317026-7317055)
chr5 (203-236)||(8336319-8336352)
chr5 (248-277)||(10345058-10345087)
chr5 (203-236)||(29653424-29653457)
chr5 (248-277)||(34209023-34209052)
chr5 (248-277)||(42104189-42104218)
chr5 (200-236)||(33741861-33741897)
[»] scaffold0110 (1 HSPs)
scaffold0110 (248-277)||(24866-24895)
[»] scaffold0078 (1 HSPs)
scaffold0078 (248-277)||(1539-1568)
[»] scaffold0048 (1 HSPs)
scaffold0048 (248-277)||(62631-62660)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 3095334 - 3095459
Alignment:
Q  111 aatgattttaatcgaacttagattaagtgactgtagattcgtggcatgaaaaattaattttgttaatcaatattttcggtatggaaatgatatactccct 210  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3095334 aatgattttaatcgaacttagattaagtaactgtagattcgtggcatgaaaaattaattttgttaatcaatattttcggtatggaaatgatatacttcct 3095433  T
Q  211 ctattttaaaatgagtgtcgttttagt 237  Q
    |||||||||||| ||||||||||||||    
T  3095434 ctattttaaaat-agtgtcgttttagt 3095459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 6374412 - 6374443
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  6374412 ttgtttcaaaatgaatgtcactttcagttttc 6374443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 39766014 - 39765983
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  39766014 ttgtttcaaaatgaatgtcactttcagttttc 39765983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 40228572 - 40228603
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  40228572 ttgtttcaaaatgaatgtcactttcagttttc 40228603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 236
Target Start/End: Complemental strand, 39970553 - 39970523
Alignment:
Q  206 tccctctattttaaaatgagtgtcgttttag 236  Q
    |||||||||||||||||||||||||||||||    
T  39970553 tccctctattttaaaatgagtgtcgttttag 39970523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 15160601 - 15160572
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  15160601 ttgtttcaaaatgaatgtcactttcagttt 15160572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 39463257 - 39463286
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  39463257 ttgtttcaaaatgaatgtcactttcagttt 39463286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 39698821 - 39698792
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  39698821 ttgtttcaaaatgaatgtcactttcagttt 39698792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 10573359 - 10573326
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||||||||||||||||||||||||||||    
T  10573359 tactccctctattttaaaatgagtgtcgttttag 10573326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 20448037 - 20448068
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  20448037 ttgtttcaaaatgaatgtcactttcagttttc 20448068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 49080635 - 49080605
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagtttt 278  Q
    |||||||||||||||||||||||||||||||    
T  49080635 ttgtttcaaaatgaatgtcactttcagtttt 49080605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 1819560 - 1819589
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  1819560 ttgtttcaaaatgaatgtcactttcagttt 1819589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 4505335 - 4505364
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  4505335 ttgtttcaaaatgaatgtcactttcagttt 4505364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 19451370 - 19451341
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  19451370 ttgtttcaaaatgaatgtcactttcagttt 19451341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 30261257 - 30261286
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  30261257 ttgtttcaaaatgaatgtcactttcagttt 30261286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 40345506 - 40345477
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  40345506 ttgtttcaaaatgaatgtcactttcagttt 40345477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 51733653 - 51733624
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  51733653 ttgtttcaaaatgaatgtcactttcagttt 51733624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 52253843 - 52253872
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  52253843 ttgtttcaaaatgaatgtcactttcagttt 52253872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 52957949 - 52957920
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  52957949 ttgtttcaaaatgaatgtcactttcagttt 52957920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 19878600 - 19878636
Alignment:
Q  200 atatactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  19878600 atatactccctctgtttcaaaatgagtgtcgttttag 19878636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 3965 - 3934
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  3965 ttgtttcaaaatgaatgtcactttcagttttc 3934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 2297036 - 2297067
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  2297036 ttgtttcaaaatgaatgtcactttcagttttc 2297067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 42880087 - 42880056
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  42880087 ttgtttcaaaatgaatgtcactttcagttttc 42880056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 45948831 - 45948754
Alignment:
Q  200 atatactccctctattttaaaatgagtgtcgttttagtnnnnnnnnnnttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||| ||  |||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  45948831 atatactccttccgttttaaaatgagtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtcactttcagttt 45948754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 716016 - 715987
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  716016 ttgtttcaaaatgaatgtcactttcagttt 715987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 1741989 - 1742018
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  1741989 ttgtttcaaaatgaatgtcactttcagttt 1742018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 22297994 - 22298023
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  22297994 ttgtttcaaaatgaatgtcactttcagttt 22298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 24780459 - 24780430
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  24780459 ttgtttcaaaatgaatgtcactttcagttt 24780430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 33682483 - 33682516
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    |||||| |||||||||||||||||||||||||||    
T  33682483 tactccatctattttaaaatgagtgtcgttttag 33682516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 34274792 - 34274821
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  34274792 ttgtttcaaaatgaatgtcactttcagttt 34274821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 32501946 - 32501914
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgtttta 235  Q
    ||||||||| |||||||||||||||||||||||    
T  32501946 tactccctccattttaaaatgagtgtcgtttta 32501914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Complemental strand, 3152958 - 3152927
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  3152958 ttgtttcaaaatgaatgtcactttcagttttc 3152927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 4759521 - 4759487
Alignment:
Q  202 atactccctctattttaaaatgagtgtcgttttag 236  Q
    |||||||||| ||||||||||||||||||||||||    
T  4759521 atactccctccattttaaaatgagtgtcgttttag 4759487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 45213630 - 45213664
Alignment:
Q  202 atactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||||||||||||||||||||||| |||||    
T  45213630 atactccctctattttaaaatgagtgtcgctttag 45213664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 2458005 - 2458034
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  2458005 ttgtttcaaaatgaatgtcactttcagttt 2458034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 23208441 - 23208412
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  23208441 ttgtttcaaaatgaatgtcactttcagttt 23208412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 33194226 - 33194193
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||| ||||||||||||||||||||||||    
T  33194226 tactccctccattttaaaatgagtgtcgttttag 33194193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 38016373 - 38016402
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  38016373 ttgtttcaaaatgaatgtcactttcagttt 38016402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 38277993 - 38277960
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||| ||||||||||||||||||||||||    
T  38277993 tactccctccattttaaaatgagtgtcgttttag 38277960  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 44676219 - 44676248
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  44676219 ttgtttcaaaatgaatgtcactttcagttt 44676248  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 3152716 - 3152748
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgtttta 235  Q
    |||||||||| ||||||||||||||||||||||    
T  3152716 tactccctctgttttaaaatgagtgtcgtttta 3152748  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 30431121 - 30431149
Alignment:
Q  251 tttcaaaatgaatgtcactttcagttttc 279  Q
    |||||||||||||||||||||||||||||    
T  30431121 tttcaaaatgaatgtcactttcagttttc 30431149  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 38140949 - 38140977
Alignment:
Q  249 tgtttcaaaatgaatgtcactttcagttt 277  Q
    |||||||||||||||||||||||||||||    
T  38140949 tgtttcaaaatgaatgtcactttcagttt 38140977  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 18579165 - 18579196
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  18579165 ttgtttcaaaatgaatgtcactttcagttttc 18579196  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 4051859 - 4051830
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  4051859 ttgtttcaaaatgaatgtcactttcagttt 4051830  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 12566135 - 12566106
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  12566135 ttgtttcaaaatgaatgtcactttcagttt 12566106  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 43427442 - 43427413
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  43427442 ttgtttcaaaatgaatgtcactttcagttt 43427413  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 43971502 - 43971531
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  43971502 ttgtttcaaaatgaatgtcactttcagttt 43971531  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 11188644 - 11188616
Alignment:
Q  251 tttcaaaatgaatgtcactttcagttttc 279  Q
    |||||||||||||||||||||||||||||    
T  11188644 tttcaaaatgaatgtcactttcagttttc 11188616  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 1430446 - 1430481
Alignment:
Q  201 tatactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1430446 tatactccctccattttaaaatgagtgtcgttttag 1430481  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 15573605 - 15573636
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  15573605 ttgtttcaaaatgaatgtcactttcagttttc 15573636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 46045971 - 46046002
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttttc 279  Q
    ||||||||||||||||||||||||||||||||    
T  46045971 ttgtttcaaaatgaatgtcactttcagttttc 46046002  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 15646985 - 15647019
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttagt 237  Q
    |||||||||| ||||||||||||||||||||||||    
T  15646985 tactccctctgttttaaaatgagtgtcgttttagt 15647019  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 46287019 - 46286985
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttagt 237  Q
    |||||||||| ||||||||||||||||||||||||    
T  46287019 tactccctctgttttaaaatgagtgtcgttttagt 46286985  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 50249262 - 50249337
Alignment:
Q  201 tatactccctctattttaaaatgagtgtcgttttagtnnnnnnnnnnttgtttcaaaatgaatgtcactttcagttt 277  Q
    |||||||||||| ||||||||||||||||| |||||           ||||||||||||||||||||||||||||||    
T  50249262 tatactccctctgttttaaaatgagtgtcgctttag-ccaaaaaaatttgtttcaaaatgaatgtcactttcagttt 50249337  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 5463573 - 5463602
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  5463573 ttgtttcaaaatgaatgtcactttcagttt 5463602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 26755218 - 26755247
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  26755218 ttgtttcaaaatgaatgtcactttcagttt 26755247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 29567894 - 29567923
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  29567894 ttgtttcaaaatgaatgtcactttcagttt 29567923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 32807091 - 32807062
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  32807091 ttgtttcaaaatgaatgtcactttcagttt 32807062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 34032233 - 34032204
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  34032233 ttgtttcaaaatgaatgtcactttcagttt 34032204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Original strand, 10842781 - 10842809
Alignment:
Q  251 tttcaaaatgaatgtcactttcagttttc 279  Q
    |||||||||||||||||||||||||||||    
T  10842781 tttcaaaatgaatgtcactttcagttttc 10842809  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 17552444 - 17552410
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttagt 237  Q
    |||||||||||||||||||||| ||||||||||||    
T  17552444 tactccctctattttaaaatgaatgtcgttttagt 17552410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 29399944 - 29399973
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  29399944 ttgtttcaaaatgaatgtcactttcagttt 29399973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Complemental strand, 13504002 - 13503974
Alignment:
Q  249 tgtttcaaaatgaatgtcactttcagttt 277  Q
    |||||||||||||||||||||||||||||    
T  13504002 tgtttcaaaatgaatgtcactttcagttt 13503974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 23936492 - 23936528
Alignment:
Q  200 atatactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||||||  |||||||||||||||||||||||    
T  23936492 atatactccctccgttttaaaatgagtgtcgttttag 23936528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Complemental strand, 15167164 - 15167134
Alignment:
Q  249 tgtttcaaaatgaatgtcactttcagttttc 279  Q
    |||||||||||||||||||||||||||||||    
T  15167164 tgtttcaaaatgaatgtcactttcagttttc 15167134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 7317026 - 7317055
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  7317026 ttgtttcaaaatgaatgtcactttcagttt 7317055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 8336319 - 8336352
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||| ||||||||||||||||||||||||    
T  8336319 tactccctccattttaaaatgagtgtcgttttag 8336352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 10345087 - 10345058
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  10345087 ttgtttcaaaatgaatgtcactttcagttt 10345058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 29653424 - 29653457
Alignment:
Q  203 tactccctctattttaaaatgagtgtcgttttag 236  Q
    ||||||||| ||||||||||||||||||||||||    
T  29653424 tactccctccattttaaaatgagtgtcgttttag 29653457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 34209052 - 34209023
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  34209052 ttgtttcaaaatgaatgtcactttcagttt 34209023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 42104218 - 42104189
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  42104218 ttgtttcaaaatgaatgtcactttcagttt 42104189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 33741897 - 33741861
Alignment:
Q  200 atatactccctctattttaaaatgagtgtcgttttag 236  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  33741897 atatactctctccattttaaaatgagtgtcgttttag 33741861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 24895 - 24866
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  24895 ttgtttcaaaatgaatgtcactttcagttt 24866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Complemental strand, 1568 - 1539
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  1568 ttgtttcaaaatgaatgtcactttcagttt 1539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 277
Target Start/End: Original strand, 62631 - 62660
Alignment:
Q  248 ttgtttcaaaatgaatgtcactttcagttt 277  Q
    ||||||||||||||||||||||||||||||    
T  62631 ttgtttcaaaatgaatgtcactttcagttt 62660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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