View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_11 (Length: 292)
Name: NF9418_low_11
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 95 - 274
Target Start/End: Original strand, 32557869 - 32558048
Alignment:
| Q |
95 |
ggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagcacgtgagccacgcatgccacgtgcggctctgtcgt |
194 |
Q |
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| T |
32557869 |
ggtgagaggattggagtaacagaagaaccaggaggggtatcatggtaaacaaaattggtacgagcacgtgagccacgcatgccacgtgcggctctgtcgt |
32557968 |
T |
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| Q |
195 |
aagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatcgcgtatctctgct |
274 |
Q |
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| T |
32557969 |
aagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatcgcgtatctctgct |
32558048 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 32557793 - 32557842
Alignment:
| Q |
22 |
aggaaccggttcaggttgaagaacaaaagaaaggtcgtaaaaactttgag |
71 |
Q |
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| T |
32557793 |
aggaacgggttcaggttgaagaacaaaagaaaggtcgtaaaaactttgag |
32557842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 6507659 - 6507735
Alignment:
| Q |
185 |
gctctgtcgtaagctaaagctgcttcttcagcagtgtcgaatgttcctaaccagtgtctttcttttgttgaaggatc |
261 |
Q |
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| T |
6507659 |
gctctatcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatc |
6507735 |
T |
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