View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_13 (Length: 288)
Name: NF9418_low_13
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 13464625 - 13464516
Alignment:
| Q |
18 |
ataagaataagaataagtataaaacgtaaaacataaaccctaaacatccagatttggggattttgatcgcaaaacagaaatagaagagaacgaatacgaa |
117 |
Q |
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| T |
13464625 |
ataagaataagaataagtataaaacgtaaaacataaaccctaaacatccagatttggggattttgatcgcaaaacaaaaatagaagagaacgaatacgaa |
13464526 |
T |
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| Q |
118 |
gaggtttcgt |
127 |
Q |
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| T |
13464525 |
gaggtttcgt |
13464516 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 13464444 - 13464355
Alignment:
| Q |
199 |
cggcgatggtgtgaaatctgaaacggcgatggtgtgaaatcg------aaggggaacgaagcagaaagaagaagagggacgaacacgaaa |
282 |
Q |
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| T |
13464444 |
cggcgatggtgtgaaatctgaaacggcgatggtgtgaaatcgacgaccaagaggaacgaagcagaaagaagaagagggacgaacacgaaa |
13464355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 14914259 - 14914319
Alignment:
| Q |
36 |
ataaaacgtaaaacataaaccctaaacatccagatttggggattttgatcgcaaaacagaa |
96 |
Q |
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| T |
14914259 |
ataaaacgtaaaacaaaaactcaaaaaatccagatttggagattttgctcgcaaaacagaa |
14914319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 52716646 - 52716586
Alignment:
| Q |
36 |
ataaaacgtaaaacataaaccctaaacatccagatttggggattttgatcgcaaaacagaa |
96 |
Q |
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| T |
52716646 |
ataaaacgtaaaacaaaaactcaaaaaatctagatttggagattttgctcgcaaaacagaa |
52716586 |
T |
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