View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_15 (Length: 259)
Name: NF9418_low_15
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5520097 - 5520339
Alignment:
| Q |
1 |
gtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaataaaatacagaaga |
100 |
Q |
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| T |
5520097 |
gtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaacaaattttgcagggactaaaataaaatacagaaga |
5520196 |
T |
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| Q |
101 |
tcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagaaactaaatgcatatttaaacctatgataaattacctg |
200 |
Q |
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| T |
5520197 |
tcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagagactaaatgcatatttaaacctatgataaattacctg |
5520296 |
T |
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| Q |
201 |
cacatcgttcgtttttacttgaaataagcttctaaatgacttc |
243 |
Q |
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| T |
5520297 |
cgcatcgttcatttttacttgaaataagcttctaaatgacttc |
5520339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 32311804 - 32311863
Alignment:
| Q |
53 |
atttcaatatgaacaaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaa |
113 |
Q |
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| T |
32311804 |
attttaatatgaataaattttgcaaagactaaaataaattaca-aggatcaaaagtaaaaa |
32311863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 10140842 - 10140886
Alignment:
| Q |
49 |
agagatttcaatatgaacaaattttgcagggactaaaataaaata |
93 |
Q |
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| T |
10140842 |
agagacttcaatatgaacatattttgtaggaactaaaataaaata |
10140886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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