View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9418_low_17 (Length: 240)

Name: NF9418_low_17
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9418_low_17
NF9418_low_17
[»] chr3 (19 HSPs)
chr3 (9-227)||(49933446-49933664)
chr3 (181-221)||(7278694-7278734)
chr3 (188-227)||(8566670-8566709)
chr3 (189-227)||(22310-22348)
chr3 (181-227)||(5169062-5169108)
chr3 (181-227)||(12096711-12096757)
chr3 (181-227)||(31566167-31566213)
chr3 (181-227)||(32170635-32170681)
chr3 (181-227)||(37083298-37083344)
chr3 (181-227)||(41529991-41530037)
chr3 (181-227)||(45486855-45486901)
chr3 (181-227)||(48508465-48508511)
chr3 (181-227)||(52139030-52139076)
chr3 (181-227)||(52927854-52927900)
chr3 (181-222)||(24778620-24778661)
chr3 (186-227)||(39512778-39512819)
chr3 (181-222)||(40672378-40672419)
chr3 (186-227)||(48734153-48734194)
chr3 (181-225)||(24541340-24541384)
[»] scaffold1318 (1 HSPs)
scaffold1318 (181-227)||(561-607)
[»] chr7 (24 HSPs)
chr7 (181-227)||(7273330-7273376)
chr7 (181-227)||(44855180-44855226)
chr7 (188-226)||(47155179-47155217)
chr7 (181-227)||(2885728-2885774)
chr7 (181-227)||(6263489-6263535)
chr7 (181-227)||(6375098-6375144)
chr7 (181-227)||(11594190-11594236)
chr7 (181-227)||(12841281-12841327)
chr7 (181-227)||(22349850-22349896)
chr7 (181-227)||(27649010-27649056)
chr7 (181-227)||(28208334-28208380)
chr7 (181-227)||(29650614-29650660)
chr7 (181-227)||(31005435-31005481)
chr7 (181-227)||(31682608-31682654)
chr7 (181-227)||(31869108-31869154)
chr7 (181-227)||(33349812-33349858)
chr7 (181-227)||(37618175-37618221)
chr7 (181-227)||(39906378-39906424)
chr7 (181-227)||(40979934-40979980)
chr7 (181-222)||(28708611-28708652)
chr7 (181-222)||(35906212-35906253)
chr7 (186-227)||(43491543-43491584)
chr7 (181-221)||(42187671-42187711)
chr7 (181-221)||(42969928-42969968)
[»] chr6 (10 HSPs)
chr6 (181-227)||(30031486-30031532)
chr6 (192-227)||(9890068-9890103)
chr6 (181-228)||(31819061-31819108)
chr6 (180-222)||(6293403-6293445)
chr6 (181-227)||(9707000-9707046)
chr6 (181-227)||(12890805-12890851)
chr6 (181-227)||(28085606-28085652)
chr6 (181-227)||(34934836-34934882)
chr6 (186-227)||(33730200-33730241)
chr6 (180-216)||(21870083-21870119)
[»] chr5 (18 HSPs)
chr5 (181-227)||(20457003-20457049)
chr5 (179-227)||(7678705-7678753)
chr5 (188-227)||(3775080-3775119)
chr5 (188-227)||(9121084-9121123)
chr5 (181-227)||(408500-408546)
chr5 (181-227)||(3302074-3302120)
chr5 (181-227)||(4496614-4496660)
chr5 (181-227)||(5558371-5558417)
chr5 (181-227)||(9234116-9234162)
chr5 (181-227)||(13561392-13561438)
chr5 (188-226)||(15252751-15252789)
chr5 (181-227)||(26884695-26884741)
chr5 (181-227)||(29816612-29816658)
chr5 (181-227)||(30213805-30213851)
chr5 (181-227)||(35118328-35118374)
chr5 (181-222)||(2915507-2915548)
chr5 (181-222)||(38685197-38685238)
chr5 (186-222)||(1287590-1287626)
[»] chr4 (29 HSPs)
chr4 (181-227)||(50967034-50967080)
chr4 (186-227)||(26024856-26024897)
chr4 (181-222)||(47265206-47265247)
chr4 (180-216)||(1380599-1380635)
chr4 (179-227)||(45209211-45209259)
chr4 (180-227)||(20999229-20999276)
chr4 (180-227)||(31339753-31339800)
chr4 (188-227)||(31961272-31961311)
chr4 (181-216)||(56375520-56375555)
chr4 (181-227)||(436459-436505)
chr4 (181-227)||(4879115-4879161)
chr4 (181-227)||(7947167-7947213)
chr4 (181-227)||(21528518-21528564)
chr4 (181-227)||(30634112-30634158)
chr4 (181-227)||(31959820-31959866)
chr4 (181-227)||(36799663-36799709)
chr4 (181-227)||(50238621-50238667)
chr4 (181-227)||(50238707-50238753)
chr4 (181-227)||(50862861-50862907)
chr4 (181-227)||(51421960-51422006)
chr4 (181-227)||(52569521-52569567)
chr4 (181-227)||(55007976-55008022)
chr4 (181-222)||(27450191-27450232)
chr4 (186-227)||(39100542-39100583)
chr4 (186-227)||(46153943-46153984)
chr4 (186-227)||(47372939-47372980)
chr4 (186-227)||(48622549-48622590)
chr4 (186-227)||(56130405-56130446)
chr4 (181-221)||(4441083-4441123)
[»] chr1 (25 HSPs)
chr1 (181-227)||(25715332-25715378)
chr1 (181-227)||(44751714-44751760)
chr1 (186-227)||(19908041-19908082)
chr1 (186-222)||(45510844-45510880)
chr1 (181-227)||(1210975-1211021)
chr1 (181-227)||(10200312-10200358)
chr1 (181-227)||(25979237-25979283)
chr1 (181-227)||(29577482-29577528)
chr1 (181-227)||(30202136-30202182)
chr1 (181-227)||(37462882-37462928)
chr1 (181-227)||(38807677-38807723)
chr1 (181-227)||(41560459-41560505)
chr1 (181-227)||(43481804-43481850)
chr1 (181-227)||(44941782-44941828)
chr1 (181-227)||(49347399-49347445)
chr1 (181-227)||(52561595-52561641)
chr1 (181-227)||(52921310-52921356)
chr1 (186-227)||(8796444-8796485)
chr1 (181-222)||(16822032-16822073)
chr1 (181-222)||(22175375-22175416)
chr1 (186-227)||(38758026-38758067)
chr1 (188-221)||(43240391-43240424)
chr1 (186-227)||(52073054-52073095)
chr1 (180-216)||(7124370-7124406)
chr1 (186-222)||(27847811-27847847)
[»] chr8 (17 HSPs)
chr8 (183-227)||(1064952-1064996)
chr8 (181-227)||(490565-490611)
chr8 (181-227)||(1928593-1928639)
chr8 (189-227)||(10668503-10668541)
chr8 (181-227)||(11523729-11523775)
chr8 (181-227)||(14742088-14742134)
chr8 (181-227)||(25473409-25473455)
chr8 (181-227)||(27556308-27556354)
chr8 (181-227)||(36545379-36545425)
chr8 (189-227)||(39049825-39049863)
chr8 (181-227)||(44529455-44529501)
chr8 (181-227)||(45419465-45419511)
chr8 (186-227)||(16921454-16921495)
chr8 (181-222)||(30689965-30690006)
chr8 (194-227)||(42591366-42591399)
chr8 (181-221)||(12491150-12491190)
chr8 (181-221)||(36394960-36395000)
[»] chr2 (28 HSPs)
chr2 (180-216)||(15836169-15836205)
chr2 (188-227)||(186138-186177)
chr2 (180-227)||(19015968-19016015)
chr2 (181-227)||(227419-227465)
chr2 (181-227)||(3635329-3635375)
chr2 (181-227)||(4807825-4807871)
chr2 (181-227)||(9531606-9531652)
chr2 (181-227)||(12474933-12474979)
chr2 (181-227)||(12520068-12520114)
chr2 (181-227)||(12882051-12882097)
chr2 (181-227)||(15775851-15775897)
chr2 (181-227)||(17670698-17670744)
chr2 (181-227)||(19863464-19863510)
chr2 (181-227)||(19867796-19867842)
chr2 (181-227)||(19872697-19872743)
chr2 (181-227)||(25834908-25834954)
chr2 (181-227)||(28508908-28508954)
chr2 (181-227)||(30306262-30306308)
chr2 (181-227)||(38328376-38328422)
chr2 (181-227)||(41763049-41763095)
chr2 (181-227)||(43573136-43573182)
chr2 (181-222)||(25384699-25384740)
chr2 (186-227)||(38452692-38452733)
chr2 (181-221)||(7431901-7431941)
chr2 (181-221)||(8181010-8181050)
chr2 (179-227)||(20900573-20900621)
chr2 (179-227)||(33393337-33393385)
chr2 (181-221)||(44877445-44877485)
[»] scaffold0168 (1 HSPs)
scaffold0168 (181-227)||(28895-28941)
[»] scaffold0018 (1 HSPs)
scaffold0018 (181-227)||(31698-31744)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 49933664 - 49933446
Alignment:
Q  9 tggtggtgatagtcaagcattcgcttcaagatatatttcccannnnnnnagctcaagatatgcttctttgacgaccaaatcttctcaaacctctagctct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49933664 tggtggtgatagtcaagcattcgcttcaagatatatttcccatttttttagctcaagatatgcttctttgacgaccaaatcttctcaaacctctagctct 49933565  T
Q  109 ggtaatactttacatatcaatttagtgttggatcttctccctgttacttataagaatgctctactataaaagtttggtccatgtagccgacctcacttag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49933564 ggtaatactttacatatcaatttagtgttggatcttctccctgttacttataagaatgctctactataaaagtttggtccatgtagccgacctcacttag 49933465  T
Q  209 tgggataaagcttgattgt 227  Q
    |||||||||||||||||||    
T  49933464 tgggataaagcttgattgt 49933446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 7278694 - 7278734
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  7278694 tttgatccatgtagccgaccccacttagtgggataaagctt 7278734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8566670 - 8566709
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  8566670 catgtagccgaccccacttagtgggataaagcttggttgt 8566709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 22310 - 22348
Alignment:
Q  189 atgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  22310 atgtagccgaccccacttagtgggataaagcttggttgt 22348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 5169062 - 5169108
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  5169062 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 5169108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12096757 - 12096711
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  12096757 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 12096711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31566213 - 31566167
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31566213 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31566167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 32170635 - 32170681
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| ||||    
T  32170635 tttgatccatgtagccgaccccacttagtgagataaagcttggttgt 32170681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 37083344 - 37083298
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||| ||||||||||| ||||||||||||||| ||||| ||||    
T  37083344 tttggtccttgtagccgaccccacttagtgggataaggcttggttgt 37083298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 41529991 - 41530037
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  41529991 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 41530037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 45486901 - 45486855
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||| || ||||||||||||||||||||| ||||    
T  45486901 tttgatccatgtagccggccccacttagtgggataaagcttggttgt 45486855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 48508465 - 48508511
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  48508465 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 48508511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 52139030 - 52139076
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  52139030 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 52139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 52927900 - 52927854
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  52927900 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 52927854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 24778661 - 24778620
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  24778661 tttgatccatgtagccgaccccacttagtgggataaggcttg 24778620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 39512778 - 39512819
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  39512778 tccatgtagccgaccccacttagtgggataaggcttggttgt 39512819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 40672419 - 40672378
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| |||||||||| |||||||||||||||||||| |||||    
T  40672419 tttgatccatgtagctgacctcacttagtgggataaggcttg 40672378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 48734194 - 48734153
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  48734194 tccatgtagctgaccccacttagtgggataaggcttgattgt 48734153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 24541384 - 24541340
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgatt 225  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||    
T  24541384 tttgatccatgtacccgaccccacttagtgggataaggcttgatt 24541340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 561 - 607
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  561 tttgatccatgtagccgaccccacttagtgggataaggcttgattgt 607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 7273330 - 7273376
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  7273330 tttgatccatgtagccgaccccacttagtgggataaggcttgattgt 7273376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 44855226 - 44855180
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  44855226 tttggtccatgtagccgaccccacttagtgggataaggcttggttgt 44855180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 47155217 - 47155179
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattg 226  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  47155217 catgtagccgaccccacttagtgggataaagcttgattg 47155179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 2885774 - 2885728
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  2885774 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 2885728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 6263489 - 6263535
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  6263489 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 6263535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 6375098 - 6375144
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  6375098 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 6375144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 11594190 - 11594236
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  11594190 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 11594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12841327 - 12841281
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  12841327 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 12841281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 22349850 - 22349896
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||| ||||| ||||||||||||||| ||||||||||    
T  22349850 tttgatccatgtagtcgaccccacttagtgggataaggcttgattgt 22349896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 27649010 - 27649056
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  27649010 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 27649056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 28208380 - 28208334
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  28208380 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 28208334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29650614 - 29650660
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  29650614 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 29650660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 31005435 - 31005481
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31005435 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31005481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31682654 - 31682608
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31682654 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31682608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31869154 - 31869108
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31869154 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31869108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 33349858 - 33349812
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  33349858 tttgatccatgtagccgacctcacttaatgggataaggcttggttgt 33349812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 37618175 - 37618221
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  37618175 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 37618221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 39906424 - 39906378
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  39906424 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 39906378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 40979980 - 40979934
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  40979980 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 40979934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 28708611 - 28708652
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  28708611 tttgatccatgtagccgaccccacttagtgggataaggcttg 28708652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 35906253 - 35906212
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  35906253 tttgatccatgtagccgaccccacttagtgggataaggcttg 35906212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 43491543 - 43491584
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  43491543 tccatgtagccgaccccacttagtgggataaggcttggttgt 43491584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 42187671 - 42187711
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  42187671 tttgatccatgtagccgaccccacttagtgggataaggctt 42187711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 42969928 - 42969968
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  42969928 tttgatccatgtagccgaccccacttagtgggataaggctt 42969968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 30031486 - 30031532
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  30031486 tttgatccatgtagccgacctcacttagtgggataaggcttggttgt 30031532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 9890103 - 9890068
Alignment:
Q  192 tagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9890103 tagccgacctcacttagtgggataaagcttggttgt 9890068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 31819061 - 31819108
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgtg 228  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| |||||    
T  31819061 tttgatccatgtagccgaccccacttagtgggataatgcttggttgtg 31819108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 6293445 - 6293403
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||||||| |||||||||||| ||||||||||||||| |||||    
T  6293445 gtttggtcaatgtagccgaccccacttagtgggataaggcttg 6293403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 9707000 - 9707046
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  9707000 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 9707046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 12890805 - 12890851
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  12890805 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 12890851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 28085606 - 28085652
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  28085606 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 28085652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 34934882 - 34934836
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  34934882 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 34934836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 33730200 - 33730241
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  33730200 tccatgtagccgaccccacttagtgggataaggcttggttgt 33730241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 21870119 - 21870083
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataa 216  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  21870119 gtttgatccatgcagccgacctcacttagtgggataa 21870083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 20457003 - 20457049
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  20457003 tttgatccatgtagccgaccccacttagtgggataaggcttgattgt 20457049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 7678705 - 7678753
Alignment:
Q  179 agtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||| ||||||||||||||| |||||||||||||||| |||| ||||    
T  7678705 agtttgatccatgtagccgaccccacttagtgggataaaacttggttgt 7678753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 3775119 - 3775080
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  3775119 catgtagccgaccccacttagtgggataaagcctgattgt 3775080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 9121123 - 9121084
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  9121123 catgtagccgacctcacttagtgggataaggcttggttgt 9121084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 408546 - 408500
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  408546 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 408500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 3302074 - 3302120
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  3302074 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 3302120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 4496614 - 4496660
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  4496614 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 4496660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 5558371 - 5558417
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  5558371 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 5558417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 9234116 - 9234162
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||||    
T  9234116 tttgatccatgtaaccgaccccacttagtgggataaggcttgattgt 9234162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 13561438 - 13561392
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  13561438 tttgatccatgtagccgaccccacttagtgggataaggcttgtttgt 13561392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 15252789 - 15252751
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattg 226  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  15252789 catgtagccgaccccacttagtgggataaggcttgattg 15252751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 26884741 - 26884695
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| |||||||||| |||| ||||||||||    
T  26884741 tttgatccatgtagccgaccccacttagtggaataaggcttgattgt 26884695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29816612 - 29816658
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  29816612 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 29816658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 30213805 - 30213851
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  30213805 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 30213851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 35118374 - 35118328
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||| ||||||||| |||||||||||| ||||||||||    
T  35118374 tttgatccatgtacccgacctcatttagtgggataaggcttgattgt 35118328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 2915548 - 2915507
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  2915548 tttgatccatgtagccgaccccacttagtgggataaggcttg 2915507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 38685197 - 38685238
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  38685197 tttgatccatgtagccgaccccacttagtgggataaggcttg 38685238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 1287626 - 1287590
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttg 222  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  1287626 tccatgtagccgaccccacttagtgggataaggcttg 1287590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 50967080 - 50967034
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||||    
T  50967080 tttgatccatgtagccgacctcacttagtggaataaagcttggttgt 50967034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 26024897 - 26024856
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  26024897 tccatgtagccgacctcacttagtgggataaggcttggttgt 26024856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 47265247 - 47265206
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  47265247 tttgatccatgtagccgacctcacttagtgggataaggcttg 47265206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 1380599 - 1380635
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataa 216  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1380599 gtttgatccatgtagccgacctcacttagtgggataa 1380635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 45209259 - 45209211
Alignment:
Q  179 agtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  45209259 agtttgatccatgtagccgaccccacttagtgggataaggcttggttgt 45209211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 20999229 - 20999276
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||| ||| ||||||||||| |||| |||||||||||||||||||||    
T  20999229 gtttgatccttgtagccgaccccactcagtgggataaagcttgattgt 20999276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 31339753 - 31339800
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||| |||||| ||||||||||||||| ||||| ||||    
T  31339753 gtttggtccatgtatccgaccccacttagtgggataaggcttgcttgt 31339800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 31961311 - 31961272
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  31961311 catgtagccgacctcacttagtgggataaggcttggttgt 31961272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 56375520 - 56375555
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataa 216  Q
    |||| |||||||||||||||||||||||||||||||    
T  56375520 tttgatccatgtagccgacctcacttagtgggataa 56375555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 436459 - 436505
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  436459 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 436505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 4879161 - 4879115
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  4879161 tttgatccatgtagccgacctcacttactgggataaggcttggttgt 4879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 7947167 - 7947213
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  7947167 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 7947213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 21528518 - 21528564
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  21528518 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 21528564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 30634158 - 30634112
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  30634158 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 30634112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 31959866 - 31959820
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31959866 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31959820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36799709 - 36799663
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||| ||||| |||||||||||||||||||| |||||    
T  36799709 tttgatccatgtagacgaccccacttagtgggataaagcttaattgt 36799663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 50238667 - 50238621
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  50238667 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 50238621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 50238753 - 50238707
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  50238753 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 50238707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 50862861 - 50862907
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  50862861 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 50862907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 51421960 - 51422006
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||| | ||||||||||||||||||||||| ||||    
T  51421960 tttgatccatgtagccaatctcacttagtgggataaagcttggttgt 51422006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 52569567 - 52569521
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  52569567 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 52569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 55007976 - 55008022
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  55007976 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 55008022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 27450232 - 27450191
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  27450232 tttgatccatgtagccgaccccacttagtgggataaggcttg 27450191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 39100583 - 39100542
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  39100583 tccatgtagccgaccccacttagtgggataaggcttggttgt 39100542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 46153943 - 46153984
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  46153943 tccatgtagccgaccccacttagtgggataaggcttggttgt 46153984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 47372939 - 47372980
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||  |||||||||||||| ||||||||||    
T  47372939 tccatgtagccgaccctacttagtgggataaggcttgattgt 47372980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 48622590 - 48622549
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  48622590 tccatgtagccgaccccacttagtgggataaggcttggttgt 48622549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 56130405 - 56130446
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  56130405 tccatgtagccgaccccacttagtgggataaggcttggttgt 56130446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 4441083 - 4441123
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  4441083 tttgatccatgtagccgaccccacttagtgggataaggctt 4441123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25715378 - 25715332
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  25715378 tttgatccatgtagccgacctcacttagtgggataaggcttggttgt 25715332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 44751714 - 44751760
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  44751714 tttgatccatgtagccgacctcacttagtgggataaggcttggttgt 44751760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 19908082 - 19908041
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  19908082 tccatgtagccgaccccacttagtgggataaggcttgattgt 19908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 45510880 - 45510844
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttg 222  Q
    ||||||||||||||| |||||||||||||||||||||    
T  45510880 tccatgtagccgaccccacttagtgggataaagcttg 45510844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 1210975 - 1211021
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  1210975 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 1211021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 10200358 - 10200312
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  10200358 tttgatccatgtagccgacctcacttaatgggataatgcttggttgt 10200312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25979283 - 25979237
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  25979283 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 25979237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29577482 - 29577528
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  29577482 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 29577528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 30202182 - 30202136
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  30202182 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 30202136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 37462928 - 37462882
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  37462928 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 37462882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 38807723 - 38807677
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  38807723 tttgttccatgtagccgaccccacttagtgggataaggcttggttgt 38807677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 41560459 - 41560505
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  41560459 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 41560505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43481850 - 43481804
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  43481850 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 43481804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 44941828 - 44941782
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  44941828 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 44941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 49347445 - 49347399
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  49347445 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 49347399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 52561641 - 52561595
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  52561641 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 52561595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 52921310 - 52921356
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  52921310 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 52921356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 8796444 - 8796485
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  8796444 tccatgtagccgaccccacttagtgggataaggcttggttgt 8796485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 16822073 - 16822032
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||||||||||||| ||||| |||||||||||||||| ||||    
T  16822073 tttggtccatgtagtcgaccccacttagtgggataaaacttg 16822032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 22175375 - 22175416
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  22175375 tttgatccatgtagccgaccccacttagtgggataaggcttg 22175416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 38758067 - 38758026
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  38758067 tccatgtagccgaccccacttagtgggataaggcttggttgt 38758026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 43240424 - 43240391
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagctt 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  43240424 catgtagccgacctcacttagtgggataaggctt 43240391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 52073095 - 52073054
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||    
T  52073095 tccatgtagccgaccccacttggtgggataaggcttgattgt 52073054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 7124370 - 7124406
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataa 216  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  7124370 gtttgatccatgtagctgacctcacttagtgggataa 7124406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 27847847 - 27847811
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttg 222  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  27847847 tccatgtagccgatctcacttagtgggataaggcttg 27847811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 1064952 - 1064996
Alignment:
Q  183 tggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||    
T  1064952 tggtccatgtagccgaccccacttagtgggataaggcttggttgt 1064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 490565 - 490611
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  490565 tttgatccatgtagccgaccccacttagtgggataaggcttgtttgt 490611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 1928639 - 1928593
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  1928639 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 1928593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 10668541 - 10668503
Alignment:
Q  189 atgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  10668541 atgtagccgacctcacttagtgggataaggcttggttgt 10668503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 11523775 - 11523729
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  11523775 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 11523729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 14742134 - 14742088
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  14742134 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 14742088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 25473455 - 25473409
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  25473455 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 25473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 27556354 - 27556308
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||| ||||||||| ||||    
T  27556354 tttgatccatgtagccgaccccacttagtgggttaaagcttggttgt 27556308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 36545379 - 36545425
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  36545379 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 36545425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 39049825 - 39049863
Alignment:
Q  189 atgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  39049825 atgtagccgaccccacttagtgggataaagctttattgt 39049863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 44529455 - 44529501
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  44529455 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 44529501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 45419465 - 45419511
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  45419465 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 45419511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 16921454 - 16921495
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  16921454 tccatgtagccgaccgtacttagtgggataaagcttggttgt 16921495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 30689965 - 30690006
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  30689965 tttgatccatgtagccgaccccacttagtgggataatgcttg 30690006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 42591366 - 42591399
Alignment:
Q  194 gccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||||||||||||||||| ||||    
T  42591366 gccgacctcacttagtgggataaagcttggttgt 42591399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 12491190 - 12491150
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  12491190 tttgatccatgtagccgaccccacttagtgggataaggctt 12491150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 36395000 - 36394960
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  36395000 tttgatccatgtagccgaccccacttagtgggataaggctt 36394960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 15836169 - 15836205
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataa 216  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15836169 gtttggtccatgtagccgaccccacttagtgggataa 15836205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 186177 - 186138
Alignment:
Q  188 catgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||| ||||||||||||||||||||||||||||| ||||    
T  186177 catgtggccgacctcacttagtgggataaagcttggttgt 186138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 19015968 - 19016015
Alignment:
Q  180 gtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||| ||||||||||||||||||||||| |||||||| |||| ||||    
T  19015968 gtttgatccatgtagccgacctcacttagcgggataaaacttggttgt 19016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 227419 - 227465
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  227419 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 227465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 3635375 - 3635329
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  3635375 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 3635329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 4807825 - 4807871
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  4807825 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 4807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 9531652 - 9531606
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  9531652 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 9531606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12474979 - 12474933
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  12474979 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 12474933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12520114 - 12520068
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  12520114 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 12520068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 12882097 - 12882051
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||| ||||||||||||||||||| ||||| ||||    
T  12882097 tttgatccatgtagcctacctcacttagtgggataaggcttggttgt 12882051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 15775897 - 15775851
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||||||||||||||||| |||||||||| |||| ||||| ||||    
T  15775897 tttggtccatgtagccgaccccacttagtggaataaggcttggttgt 15775851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 17670698 - 17670744
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  17670698 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 17670744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 19863464 - 19863510
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||| || ||||||||||||||||||||| ||||    
T  19863464 tttgatccatgtagccgtccccacttagtgggataaagcttggttgt 19863510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 19867796 - 19867842
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||| || ||||||||||||||||||||| ||||    
T  19867796 tttgatccatgtagccgtccccacttagtgggataaagcttggttgt 19867842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 19872697 - 19872743
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| |||||||||||| || ||||||||||||||||||||| ||||    
T  19872697 tttgatccatgtagccgtccccacttagtgggataaagcttggttgt 19872743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 25834908 - 25834954
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  25834908 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 25834954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 28508908 - 28508954
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  28508908 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 28508954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 30306262 - 30306308
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  30306262 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 30306308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 38328422 - 38328376
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  38328422 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 38328376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 41763095 - 41763049
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  41763095 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 41763049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43573182 - 43573136
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  43573182 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 43573136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 25384699 - 25384740
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttg 222  Q
    |||| ||||||||||| ||||||||||||||||||| |||||    
T  25384699 tttgatccatgtagccaacctcacttagtgggataaggcttg 25384740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 38452733 - 38452692
Alignment:
Q  186 tccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||    
T  38452733 tccatgtagccgaccccacttagtgggataaggcttggttgt 38452692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 7431941 - 7431901
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| |||||| | |||||||||||||||||||||||||||    
T  7431941 tttgatccatgcaaccgacctcacttagtgggataaagctt 7431901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 8181010 - 8181050
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||| ||||||||||||||| ||||||||||||||| ||||    
T  8181010 tttgatccatgtagccgaccccacttagtgggataaggctt 8181050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 20900573 - 20900621
Alignment:
Q  179 agtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||| |||||||||||||||||||||| |  ||||| ||||||||||    
T  20900573 agtttgatccatgtagccgacctcacttaattagataaggcttgattgt 20900621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 33393337 - 33393385
Alignment:
Q  179 agtttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||||| |||||||| |||||| |||||| |||||||||||||| ||||    
T  33393337 agtttgatccatgtaaccgaccccacttactgggataaagcttggttgt 33393385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 44877485 - 44877445
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagctt 221  Q
    |||||||||||||||||||| ||||| ||||||||| ||||    
T  44877485 tttggtccatgtagccgaccccacttcgtgggataaggctt 44877445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 28941 - 28895
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  28941 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 28895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 31698 - 31744
Alignment:
Q  181 tttggtccatgtagccgacctcacttagtgggataaagcttgattgt 227  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31698 tttgatccatgtagccgaccccacttagtgggataaggcttggttgt 31744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University