View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_18 (Length: 224)
Name: NF9418_low_18
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 42083328 - 42083534
Alignment:
| Q |
1 |
tcactaacacttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggtt |
100 |
Q |
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| T |
42083328 |
tcaccaacacttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggtt |
42083427 |
T |
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| Q |
101 |
caagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtact |
200 |
Q |
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| T |
42083428 |
caagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtact |
42083527 |
T |
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| Q |
201 |
atccaca |
207 |
Q |
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||||||| |
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| T |
42083528 |
atccaca |
42083534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 42086858 - 42087051
Alignment:
| Q |
14 |
tgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatgg |
113 |
Q |
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||||||||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||| || |
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| T |
42086858 |
tgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaacttcaactttcattataggttcaagcattctcgg |
42086957 |
T |
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| Q |
114 |
tttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca |
207 |
Q |
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| T |
42086958 |
tccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaagccaacacacttgaatctacatcatggtaagaaccatccaca |
42087051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
| Q |
95 |
taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta |
194 |
Q |
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|||||||||||||| ||| ||||||||| |||||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
29242508 |
taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta |
29242410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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