View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_2 (Length: 438)
Name: NF9418_low_2
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 52513054 - 52512617
Alignment:
| Q |
1 |
atgaagtaaaacaagtattcagaaatgtcatttgtttacttttcactctcatagaataaacatcttactaagaaatttataacactaatataggtacctg |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52513054 |
atgaagaaaaacaagtattcagaaaagtcatttgtttacttttcactctcatagaatagacatcttactaagaaatttataacactaatataggtacctg |
52512955 |
T |
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| Q |
101 |
acttccatggtagtggaacatgatgtctttgtccacctgtttttggtgataatgagggaggaatcgctctatctagatcaaaaagtgtaaaacaaaaatt |
200 |
Q |
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| T |
52512954 |
acttccatggtagtggaacatgatgtctttgtccacctgtttttggtgataatgagggaggaatcgctctatctagatcaaaaagtgtaaaacaaaaatt |
52512855 |
T |
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| Q |
201 |
ggttatatattcagttgcagcaaagaacttcatttgtgacacaatttaataaatcattcctatagtgccacaaacctcgaggttttgaaatgggaggaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512854 |
ggttatatattcagttgcagcaaagaacttcatttgtgacacaatttaataaatcattcctatagtgccacaaacctcgaggttttgaaatgggaggaga |
52512755 |
T |
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| Q |
301 |
aacaatatatgatggtgcaggggcaggaacggtaattatgtttcttttatgatgatgtttataatttgagaccgaaggcgtcaaaacaggagaatgtatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512754 |
aacaatatatgatggtgcaggggcaggaacggtaattatgtttcttttatgatgatgtttataatttgagaccgaaggcgtcaaaacaggagaatgtatt |
52512655 |
T |
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| Q |
401 |
ttggttggaagtggctttggtgttttgtacaaaggtgc |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
52512654 |
ttggctggaagtggctttggtgttttgtacaaaggtgc |
52512617 |
T |
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