View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_21 (Length: 221)
Name: NF9418_low_21
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 40520784 - 40520973
Alignment:
| Q |
12 |
agcacagaaaccataagctggaagacataaaatcaagagaacaaatacatggtcaattatttcatcnnnnnnncctttctttctcatattgcttagttta |
111 |
Q |
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| T |
40520784 |
agcatagaaaccataagctggaagacataaaatcaagagaacaaatacatggtcaattatttcatatttt-----tttctttctcatattgcttagttta |
40520878 |
T |
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| Q |
112 |
acaggaaaacatggttatggaaaaatatacggttgcaaaacccgagcaaaaagaagtgacttaccaagaatccaagaatccgctgatagggggag |
206 |
Q |
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| T |
40520879 |
acaggaaaacatggttatggaaaaatatacggttgcaaaactcgagcaaaaagaagtgacttaccaagaatccaagaatccgctgatagggggag |
40520973 |
T |
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