View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_26 (Length: 206)
Name: NF9418_low_26
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 42083067 - 42082940
Alignment:
| Q |
59 |
tgctgagatgtttatgtatgtcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatatggtatctcgaaac |
158 |
Q |
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| T |
42083067 |
tgctgagatgtttctgtatgtcggtacacttagggtgctgacagagggccgtgcatcctactcaatgcagtttgacaggtttgatacggtatctcgaaac |
42082968 |
T |
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| Q |
159 |
attcagaatgaaatttccacaaattatt |
186 |
Q |
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| T |
42082967 |
attcagaatgaacttaccacaaattatt |
42082940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 42086582 - 42086427
Alignment:
| Q |
26 |
gtgaaaacaggtggttgagtcattagtacccattgctgagatgtttatgtatgtcggtacacttagggtgctgacagagggccgtgcatcctactcaatg |
125 |
Q |
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| T |
42086582 |
gtgaaaacaggtggttgattcattagtacctcttgctgagatgtttcagtatgtcagtacactaagagggatgacaaagggtcgtgcatcatactctatg |
42086483 |
T |
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| Q |
126 |
cagtttgacaggtttgatatggtatctcgaaacattcagaatgaaatttccacaaa |
181 |
Q |
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| T |
42086482 |
caattagccatgtttgatgtggtacctcaacacattcagaatcaacttgccacaaa |
42086427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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